TSS: Rfhg 12452.1: Difference between revisions

Latest revision as of 18:40, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_12452.1
Species:	human
Chr:	chr1

Start:	151156628
End:	151156654
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2221853,EH38E1384103)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000368910.4:0 AF271774:0 AL833373:0
GeneID:	79626
HGNC/MGI_ID:	HGNC:26277
UniProt_ID:	Q6P589
Nearer transcript ids and distances:	AK225472:1 AK027120:1 ENST00000602841.5:10 BC063014:23 view more...

Gene_name:	TNF alpha induced protein 8 like 2
Gene_symbol:	TNFAIP8L2
Gene_synonyms:	FLJ23467
Gene_source:	HGNC:26277

TATA-Box annotation

Distance to TSS:	-8
Nearest PromoterID:	NR_144937
Entrez ID:	100534012
Nearest Unigene:	Hs.732060
Nearest Refseq:	NM_001204848
Nearest Ensembl:	ENSG00000163156
Gene Name:	TNF alpha induced protein 8 like 2
Gene Alias:	SCNM1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.592593
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=TNFAIP8L2-SCNM1 readthrough
 |gene_id=79626
-|gene_name=TNFAIP8L2-SCNM1
+|gene_name=TNF alpha induced protein 8 like 2
 |gene_source=HGNC:26277
 |gene_symbol=TNFAIP8L2
@@ Line 35: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000368910.4 NM_024575.5 NM_001204848.2 NR_144937.2 AF271774 AL833373
+|transcript_name=ENST00000368910.4 AF271774 AL833373
 |tss_cluster_detected=1
 |tss_id=rfhg_12452.1