TSS: Rfhg 131731.1: Difference between revisions

Latest revision as of 20:52, 13 March 2025

Basic information about the TSS

TSS ID:	rfhg_131731.1
Species:	human
Chr:	chr10

Start:	130110808
End:	130110838
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D2408720,EH38E1511212)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000643056.1:0 ENST00000637128.2:0 ENST00000456581.1:0 AK094118:0
GeneID:	387723
HGNC/MGI_ID:	HGNC:48677
UniProt_ID:	A0A1B0GTS3 A0A1B0GUT2 A0A2R8YF93
Nearer transcript ids and distances:	ENST00000647406.1:6 EU250747:6 view more...

Gene_name:	chromosome 10 open reading frame 143
Gene_symbol:	C10orf143
Gene_synonyms:
Gene_source:	HGNC:48677

TATA-Box annotation

Distance to TSS:	-2
Nearest PromoterID:	NR_149170
Entrez ID:	387723
Nearest Unigene:	Hs.127394
Nearest Refseq:	NM_001355042
Nearest Ensembl:	ENSG00000237489
Gene Name:	chromosome 10 open reading frame 143
Gene Alias:	LINC00959
Gene Type:	protein-coding
CpG%:	0.133333
GC%:	0.806452
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=chromosome 10 open reading frame 143
 |gene_id=387723
-|gene_name=C10orf143
+|gene_name=chromosome 10 open reading frame 143
 |gene_source=HGNC:48677
 |gene_symbol=C10orf143
@@ Line 35: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=ENST00000643056.1 ENST00000637128.2 ENST00000456581.1 NM_001355042.2 NR_034125.2 NR_149170.2 AK094118
+|transcript_name=ENST00000643056.1 ENST00000637128.2 ENST00000456581.1 AK094118
 |tss_cluster_detected=1
 |tss_id=rfhg_131731.1