TSS: Rfhg 138013.1: Difference between revisions

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|gene_description=citrate synthase lysine methyltransferase
|gene_description=citrate synthase lysine methyltransferase
|gene_id=751071
|gene_id=751071
|gene_name=CSKMT
|gene_name=citrate synthase lysine methyltransferase
|gene_source=HGNC:33113
|gene_source=HGNC:33113
|gene_symbol=CSKMT
|gene_symbol=CSKMT
Line 35: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000398922.6 ENST00000532971.2 ENST00000529868.1 NM_001043229.2 AK297138 BC041359
|transcript_name=ENST00000398922.6 ENST00000532971.2 ENST00000529868.1 AK297138 BC041359
|tss_cluster_detected=10
|tss_cluster_detected=10
|tss_id=rfhg_138013.1
|tss_id=rfhg_138013.1

Latest revision as of 22:55, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_138013.1
Species:human
Chr:chr11
Start:62665306
End:62665322
Strand:+
Source datasetsPRJNA401781|PRJNA597322|PRJNA4843412|DRA013844|PRJNA548673
|PRJNA615891
Protocololigo_capping|CAGE|RAMPAGE|STRIPE-seq|NETCAGE
|ReCappable-seq|SLIC_CAGE|TIF-seq2
TSS cluster detected*10

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2456700,EH38E1542769)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000398922.6:0
ENST00000532971.2:0
ENST00000529868.1:0
AK297138:0
BC041359:0
GeneID:751071
HGNC/MGI_ID:HGNC:33113
UniProt_ID:A8MUP2
Nearer transcript ids and distances:
  • LF344776:11
  • MA580353:11
  • ENST00000594728.1:14
  • NR_004390.1:100
  • LP896820:100
  • LF344777:-234
  • MA580354:-234
  • LF211233:-354
  • MA446810:-354
  • LF383494:-399
  • MA619071:-399
  • BC147001:420
  • BC147011:420
  • BC171895:420
view more...
Gene_name:citrate synthase lysine methyltransferase
Gene_symbol:CSKMT
Gene_synonyms:CS-KMT U99HG
Gene_source:HGNC:33113



TATA-Box annotation

Distance to TSS:2
Nearest PromoterID:NM_001043229
Entrez ID:751071
Nearest Unigene:Hs.640726
Nearest Refseq:NM_001043229
Nearest Ensembl:ENSG00000214756
Gene Name:citrate synthase lysine methyltransferase
Gene Alias:CS-KMT|METTL12|U99HG
Gene Type:protein-coding
CpG%:0.062500
GC%:0.705882
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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