TSS: Rfhg 154332.1: Difference between revisions

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|gene_description=centrosomal protein 290
|gene_description=centrosomal protein 290
|gene_id=80184
|gene_id=80184
|gene_name=CEP290
|gene_name=centrosomal protein 290
|gene_source=HGNC:29021
|gene_source=HGNC:29021
|gene_symbol=CEP290
|gene_symbol=CEP290
Line 35: Line 35:
|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000552810.6 ENST00000674971.1 ENST00000672414.2 ENST00000673058.2 ENST00000675833.1 ENST00000675476.1 ENST00000309041.12 ENST00000675794.1 ENST00000676074.1 ENST00000675408.1 ENST00000675230.1 ENST00000675628.1 ENST00000676448.1 ENST00000547926.7 ENST00000671822.2 ENST00000676351.1 ENST00000397838.8 ENST00000675559.1 ENST00000676418.1 ENST00000676331.1 ENST00000552770.3 NM_025114.4 LF208879 MA444456
|transcript_name=ENST00000552810.6 ENST00000674971.1 ENST00000672414.2 ENST00000673058.2 ENST00000675833.1 ENST00000675476.1 ENST00000309041.12 ENST00000675794.1 ENST00000676074.1 ENST00000675408.1 ENST00000675230.1 ENST00000675628.1 ENST00000676448.1 ENST00000547926.7 ENST00000671822.2 ENST00000676351.1 ENST00000397838.8 ENST00000675559.1 ENST00000676418.1 ENST00000676331.1 ENST00000552770.3
|tss_cluster_detected=14
|tss_cluster_detected=14
|tss_id=rfhg_154332.1
|tss_id=rfhg_154332.1

Latest revision as of 04:14, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_154332.1
TSS ID(Version3):hg_132405.1
Species:human
Chr:chr12
Start:88142066
End:88142203
Strand:-
Source datasetsFANTOM5|EPD|DRA000914|PRJNA401781|PRJNA548673|PRJNA615891
|PRJNA4843412|DRA013844|PRJNA597322|PRJDB5282
ProtocolCAGE|TSS_database|RAMPAGE|oligo_capping|ReCappable-seq
|SLIC_CAGE|NETCAGE|TIF-seq2|STRIPE-seq|C1CAGE
TSS cluster detected*14

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2586942,EH38E1630094)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000552810.6:0
ENST00000674971.1:0
ENST00000672414.2:0
ENST00000673058.2:0
ENST00000675833.1:0
ENST00000675476.1:0
ENST00000309041.12:0
ENST00000675794.1:0
ENST00000676074.1:0
ENST00000675408.1:0
ENST00000675230.1:0
ENST00000675628.1:0
ENST00000676448.1:0
ENST00000547926.7:0
ENST00000671822.2:0
ENST00000676351.1:0
ENST00000397838.8:0
ENST00000675559.1:0
ENST00000676418.1:0
ENST00000676331.1:0
ENST00000552770.3:0
GeneID:80184
HGNC/MGI_ID:HGNC:29021
UniProt_ID:A0A0A0MS86 A0A5F9ZHU6 A0A5F9ZHV7 A0A6Q8PFZ5 A0A6Q8PG44 A0A6Q8PGA1 A0A6Q8PGB1 A0A6Q8PGC3 A0A6Q8PGP6 A0A6Q8PGQ4 A0A6Q8PH24 A0A6Q8PH78 F8VS29 F8W097 J3KNF5 O15078
Nearer transcript ids and distances:
  • DQ109808:-13
  • AK023677:-13
  • LF323664:91
  • MA559241:91
  • BC043398:96
  • ENST00000675361.1:218
  • ENST00000550962.6:279
view more...
Gene_name:centrosomal protein 290
Gene_symbol:CEP290
Gene_synonyms:3H11Ag BBS14 CT87 FLJ13615 JBTS5 KIAA0373 LCA10 MKS4 NPHP6 POC3 SLSN6 rd16
Gene_source:HGNC:29021



TATA-Box annotation

Distance to TSS:82
Nearest PromoterID:NM_025114
Entrez ID:80184
Nearest Unigene:Hs.150444
Nearest Refseq:NM_025114
Nearest Ensembl:ENSG00000198707
Gene Name:centrosomal protein 290
Gene Alias:3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16
Gene Type:protein-coding
CpG%:0.065693
GC%:0.565217
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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