TSS: Rfhg 173487.1: Difference between revisions

Latest revision as of 10:10, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_173487.1
Species:	human
Chr:	chr15

Start:	45252229
End:	45252253
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS (EH38D2783624,EH38E1758758)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000560438.5:0 ENST00000347644.8:0 AK222709:0 U84392:0
GeneID:	9153
HGNC/MGI_ID:	HGNC:11002
UniProt_ID:	H0YNM6 O43868 Q53H72
Nearer transcript ids and distances:	AK291974:6

Gene_name:	solute carrier family 28 member 2
Gene_symbol:	SLC28A2
Gene_synonyms:	CNT2 HCNT2 HsT17153 SPNT1
Gene_source:	HGNC:11002

TATA-Box annotation

Distance to TSS:	7
Nearest PromoterID:	NM_004212
Entrez ID:	9153
Nearest Unigene:	Hs.367833
Nearest Refseq:	NM_004212
Nearest Ensembl:	ENSG00000137860
Gene Name:	solute carrier family 28 member 2
Gene Alias:	CNT2\|HCNT2\|HsT17153\|SPNT1
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.520000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=solute carrier family 28 member 2
 |gene_id=9153
-|gene_name=SLC28A2
+|gene_name=solute carrier family 28 member 2
 |gene_source=HGNC:11002
 |gene_symbol=SLC28A2
@@ Line 35: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000560438.5 ENST00000347644.8 NM_004212.4 AK222709 U84392
+|transcript_name=ENST00000560438.5 ENST00000347644.8 AK222709 U84392
 |tss_cluster_detected=2
 |tss_id=rfhg_173487.1