TSS: Rfhg 179933.1: Difference between revisions

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|gene_description=serine/arginine repetitive matrix 2
|gene_description=serine/arginine repetitive matrix 2
|gene_id=23524
|gene_id=23524
|gene_name=SRRM2
|gene_name=serine/arginine repetitive matrix 2
|gene_source=HGNC:16639
|gene_source=HGNC:16639
|gene_symbol=SRRM2
|gene_symbol=SRRM2
Line 35: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000576924.5 ENST00000575009.5 ENST00000301740.13 ENST00000575701.4 ENST00000576894.5 ENST00000630499.2 ENST00000576415.5 ENST00000571378.5 NM_016333.4 BC070050 BC020639 AF201422 AB016092 BC032416 BC046104 BC041155 BC007752 AB002322 AB016089 AB016088
|transcript_name=ENST00000576924.5 ENST00000575009.5 ENST00000301740.13 ENST00000575701.4 ENST00000576894.5 ENST00000630499.2 ENST00000576415.5 ENST00000571378.5 BC070050 BC020639 AF201422 AB016092 BC032416 BC046104 BC041155 BC007752 AB002322 AB016089 AB016088
|tss_cluster_detected=8
|tss_cluster_detected=8
|tss_id=rfhg_179933.1
|tss_id=rfhg_179933.1

Latest revision as of 12:10, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_179933.1
Species:human
Chr:chr16
Start:2752623
End:2752720
Strand:+
Source datasetsPRJNA4843412|DRA013844|PRJNA401781|PRJNA548673|PRJNA615891
ProtocolNETCAGE|CAGE|ReCappable-seq|SLIC_CAGE|RAMPAGE|TIF-seq2
TSS cluster detected*8

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000576924.5:0
ENST00000575009.5:0
ENST00000301740.13:0
ENST00000575701.4:0
ENST00000576894.5:0
ENST00000630499.2:0
ENST00000576415.5:0
ENST00000571378.5:0
BC070050:0
BC020639:0
AF201422:0
AB016092:0
BC032416:0
BC046104:0
BC041155:0
BC007752:0
AB002322:0
AB016089:0
AB016088:0
GeneID:23524
HGNC/MGI_ID:HGNC:16639
UniProt_ID:A0A140VK53 I3L182 I3L1C0 I3L1I8 I3L4D8 Q05BI2 Q05CV9 Q9UQ35 Q9UQ39
Nearer transcript ids and distances:
  • LF210718:-23
  • MA446295:-23
  • LF340573:34
  • MA576150:34
view more...
Gene_name:serine/arginine repetitive matrix 2
Gene_symbol:SRRM2
Gene_synonyms:Cwc21 KIAA0324 SRL300 SRm300
Gene_source:HGNC:16639



TATA-Box annotation

Distance to TSS:33
Nearest PromoterID:NM_016333
Entrez ID:23524
Nearest Unigene:Hs.433343
Nearest Refseq:NM_016333
Nearest Ensembl:ENSG00000167978
Gene Name:serine/arginine repetitive matrix 2
Gene Alias:300-KD|CWF21|Cwc21|HSPC075|SRL300|SRm300
Gene Type:protein-coding
CpG%:0.134021
GC%:0.714286
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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