TSS: Rfhg 179969.1: Difference between revisions

Latest revision as of 12:11, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_179969.1
TSS ID(Version3):	hg_152297.1
Species:	human
Chr:	chr16

Start:	2767542
End:	2767728
Strand:	+

Source datasets

FANTOM5|PRJDB5282

Protocol

CAGE|C1CAGE

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000572883.1:0 AK025903:0
GeneID:	23524
HGNC/MGI_ID:	HGNC:16639
UniProt_ID:	I3L3Q8
Nearer transcript ids and distances:	ENST00000574593.1:-35 LF340660:-65 MA576237:-65 ENST00000572721.1:128 LF340659:-202 MA576236:-202 ENST00000573311.1:353 LF340665:428 MA576242:428 BC009062:462 LF340657:-473 MA576234:-473 view more...

Gene_name:	serine/arginine repetitive matrix 2
Gene_symbol:	SRRM2
Gene_synonyms:	Cwc21 KIAA0324 SRL300 SRm300
Gene_source:	HGNC:16639

TATA-Box annotation

Distance to TSS:	9645
Nearest PromoterID:	NM_007108
Entrez ID:	6923
Nearest Unigene:	Hs.172772
Nearest Refseq:	NM_007108
Nearest Ensembl:	ENSG00000103363
Gene Name:	serine/arginine repetitive matrix 2
Gene Alias:	SIII\|TCEB2
Gene Type:	protein-coding
CpG%:	0.048387
GC%:	0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=elongin B
 |gene_id=23524
-|gene_name=ELOB
+|gene_name=serine/arginine repetitive matrix 2
 |gene_source=HGNC:16639
 |gene_symbol=SRRM2
@@ Line 35: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000572883.1 AK025903 LF340662 MA576239
+|transcript_name=ENST00000572883.1 AK025903
 |tss_cluster_detected=2
 |tss_id=rfhg_179969.1