TSS: Rfhg 189624.1: Difference between revisions

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|gene_description=small Cajal body-specific RNA 21
|gene_description=small Cajal body-specific RNA 21
|gene_id=677763
|gene_id=677763
|gene_name=SCARNA21
|gene_name=small Cajal body-specific RNA 21
|gene_source=HGNC:32579
|gene_source=HGNC:32579
|gene_symbol=SCARNA21
|gene_symbol=SCARNA21

Latest revision as of 15:13, 14 March 2025

Basic information about the TSS


TSS ID:rfhg_189624.1
TSS ID(Version3):hg_159443.1
Species:human
Chr:chr17
Start:7905968
End:7906071
Strand:+
Source datasetsFANTOM5|DRA000914|ENCODE|RAMPAGE|PRJDB5282
ProtocolCAGE|RAMPAGE|C1CAGE
TSS cluster detected*5

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000517026.1:51
GeneID:677763
HGNC/MGI_ID:HGNC:32579
UniProt_ID:
Nearer transcript ids and distances:
  • NR_003000.1:52
  • DQ586430:223
view more...
Gene_name:small Cajal body-specific RNA 21
Gene_symbol:SCARNA21
Gene_synonyms:ACA68 SCARNA21A
Gene_source:HGNC:32579



TATA-Box annotation


Distance to TSS:-104
Nearest PromoterID:NR_003000
Entrez ID:677763
Nearest Unigene:
Nearest Refseq:NR_003000
Nearest Ensembl:ENSG00000252835
Gene Name:small Cajal body-specific RNA 21
Gene Alias:ACA68|SCARNA21A
Gene Type:ncRNA
CpG%:0.019417
GC%:0.528846
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.