TSS: Rfhg 195432.1: Difference between revisions

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|gene_description=speckle type BTB/POZ protein
|gene_description=speckle type BTB/POZ protein
|gene_id=
|gene_id=
|gene_name=SPOP
|gene_name=
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=

Latest revision as of 17:04, 14 March 2025

Basic information about the TSS


TSS ID:rfhg_195432.1
Species:human
Chr:chr17
Start:49646513
End:49646520
Strand:-
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D2939786,EH38E1869131)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:NM_001370730.1:0
NM_001370731.1:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000510476.5:-102
  • ENST00000503676.5:-110
  • AK293045:-110
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:2
Nearest PromoterID:NM_001370730
Entrez ID:8405
Nearest Unigene:Hs.463382
Nearest Refseq:NM_003563
Nearest Ensembl:ENSG00000121067
Gene Name:
Gene Alias:BTBD32|TEF2
Gene Type:protein-coding
CpG%:0.142857
GC%:0.625000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):