TSS: Rfhg 198383.1: Difference between revisions

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|gene_description=SLC9A3 regulator 1
|gene_description=SLC9A3 regulator 1
|gene_id=9368
|gene_id=9368
|gene_name=SLC9A3R1
|gene_name=NHERF family PDZ scaffold protein 1
|gene_source=HGNC:11075
|gene_source=HGNC:11075
|gene_symbol=NHERF1
|gene_symbol=NHERF1
Line 35: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000262613.10 ENST00000583369.5 NM_004252.5 AK312498 AK094467 AK128474 AK026581 BC049220 BC003361 AF015926 BC011777 BC053350 BC001443 LF137651 LF160480 LF162616 LF953368 LG005713 LG053409 LG240648 LP835283 LP939590 LQ070510 LV470733 LY267871 MA644011 MA731895 MP015325 MA801064 MP129423 MP162346 MP168057 MB120026 MB481484 MP395089
|transcript_name=ENST00000262613.10 ENST00000583369.5 AK312498 AK094467 AK128474 AK026581 BC049220 BC003361 AF015926 BC011777 BC053350 BC001443
|tss_cluster_detected=9
|tss_cluster_detected=9
|tss_id=rfhg_198383.1
|tss_id=rfhg_198383.1

Latest revision as of 17:58, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_198383.1
TSS ID(Version3):hg_162657.1
hg_162658.1
Species:human
Chr:chr17
Start:74748619
End:74748671
Strand:+
Source datasetsFANTOM5|PRJNA4843412|DRA013844|PRJNA597322|PRJNA401781
|PRJNA548673|PRJNA615891
ProtocolCAGE|NETCAGE|STRIPE-seq|ReCappable-seq|SLIC_CAGE|TIF-seq2
TSS cluster detected*9

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2962213,EH38E1885192)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000262613.10:0
ENST00000583369.5:0
AK312498:0
AK094467:0
AK128474:0
AK026581:0
BC049220:0
BC003361:0
AF015926:0
BC011777:0
BC053350:0
BC001443:0
GeneID:9368
HGNC/MGI_ID:HGNC:11075
UniProt_ID:B2R6A3 B3KSV9 J3QRP6 O14745
Nearer transcript ids and distances:
  • ENST00000581999.1:-6
  • NR_037409.1:-6
  • LG052434:-6
  • AF036241:12
  • AB528945:176
  • KJ892757:176
  • KR709325:176
  • KR709326:176
view more...
Gene_name:NHERF family PDZ scaffold protein 1
Gene_symbol:NHERF1
Gene_synonyms:EBP50 NHE-RF NHERF NHERF-1
Gene_source:HGNC:11075



TATA-Box annotation

Distance to TSS:17
Nearest PromoterID:NM_004252
Entrez ID:9368
Nearest Unigene:Hs.724482
Nearest Refseq:NM_004252
Nearest Ensembl:ENSG00000109062
Gene Name:NHERF family PDZ scaffold protein 1
Gene Alias:EBP50|NHERF|NHERF-1|NHERF1|NPHLOP2
Gene Type:protein-coding
CpG%:0.134615
GC%:0.735849
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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