TSS: Rfhg 210301.1: Difference between revisions

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|gene_description=uncharacterized LOC101927151
|gene_description=uncharacterized LOC101927151
|gene_id=101927151
|gene_id=101927151
|gene_name=LOC101927151
|gene_name=long intergenic non-protein coding RNA 2987
|gene_source=HGNC:56093
|gene_source=HGNC:56093
|gene_symbol=LINC02987
|gene_symbol=LINC02987
Line 35: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000653426.1 ENST00000667196.1 ENST00000655543.1 ENST00000670399.1 ENST00000592404.6 ENST00000668414.1 ENST00000659857.1 ENST00000667566.1 ENST00000588122.5 ENST00000656827.1 ENST00000586784.1 ENST00000592806.1 ENST00000590628.1 ENST00000588318.1 BC024732
|transcript_name=BC024732
|tss_cluster_detected=11
|tss_cluster_detected=11
|tss_id=rfhg_210301.1
|tss_id=rfhg_210301.1

Latest revision as of 21:45, 14 March 2025

Basic information about the TSS

TSS ID:rfhg_210301.1
TSS ID(Version3):hg_174970.1
Species:human
Chr:chr19
Start:27793443
End:27793503
Strand:+
Source datasetsFANTOM5|PRJNA4843412|DRA013844|PRJDB5282|PRJNA401781
|PRJNA548673|PRJNA615891
ProtocolCAGE|NETCAGE|C1CAGE|oligo_capping|RAMPAGE|ReCappable-seq
|SLIC_CAGE|TIF-seq2
TSS cluster detected*11

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3051855,EH38E1946954)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:BC024732:0
GeneID:101927151
HGNC/MGI_ID:HGNC:56093
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000585917.6:-12
  • ENST00000666789.1:-12
  • NR_110689.2:-12
  • NR_110691.2:-12
  • NR_110688.2:-12
  • NR_146735.1:-12
  • NR_146734.1:-12
  • NR_146733.1:-12
  • ENST00000669503.1:392
  • NR_110690.1:392
  • NR_110687.1:392
  • NR_146736.1:392
  • ENST00000668186.1:465
  • ENST00000669909.1:498
view more...
Gene_name:long intergenic non-protein coding RNA 2987
Gene_symbol:LINC02987
Gene_synonyms:
Gene_source:HGNC:56093



TATA-Box annotation

Distance to TSS:42
Nearest PromoterID:NR_110691
Entrez ID:101927151
Nearest Unigene:Hs.567934
Nearest Refseq:NR_110687
Nearest Ensembl:ENSG00000267575
Gene Name:long intergenic non-protein coding RNA 2987
Gene Alias:-
Gene Type:ncRNA
CpG%:0.050000
GC%:0.622951
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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