TSS: Rfhg 211039.1: Difference between revisions

Latest revision as of 21:59, 14 March 2025

Basic information about the TSS

TSS ID:	rfhg_211039.1
Species:	human
Chr:	chr19

Start:	35666516
End:	35666518
Strand:	+

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000617999.4:0 ENST00000616789.4:0
GeneID:	11045
HGNC/MGI_ID:	HGNC:12577
UniProt_ID:	O00322
Nearer transcript ids and distances:	ENST00000379013.6:295 ENST00000222275.2:295 KJ902190:295 KJ898339:295 BC107097:295 BC107098:295 AF085807:300 view more...

Gene_name:	uroplakin 1A
Gene_symbol:	UPK1A
Gene_synonyms:	TSPAN21
Gene_source:	HGNC:12577

TATA-Box annotation

Distance to TSS:	1
Nearest PromoterID:	NM_001281443
Entrez ID:	11045
Nearest Unigene:	Hs.159309
Nearest Refseq:	NM_007000
Nearest Ensembl:	ENSG00000105668
Gene Name:	uroplakin 1A
Gene Alias:	TSPAN21\|UP1A\|UPIA\|UPKA
Gene Type:	protein-coding
CpG%:	0.000000
GC%:	0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=uroplakin 1A
 |gene_id=11045
-|gene_name=UPK1A
+|gene_name=uroplakin 1A
 |gene_source=HGNC:12577
 |gene_symbol=UPK1A
@@ Line 35: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000617999.4 ENST00000616789.4 NM_007000.4 NM_001281443.2
+|transcript_name=ENST00000617999.4 ENST00000616789.4
 |tss_cluster_detected=1
 |tss_id=rfhg_211039.1