TSS: Rfhg 227412.1: Difference between revisions

Latest revision as of 02:57, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_227412.1
Species:	human
Chr:	chr22

Start:	16825405
End:	16825424
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS (EH38D3350500,EH38E2148336)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000684488.1:0
GeneID:	150165
HGNC/MGI_ID:	HGNC:28778
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	XK related 3
Gene_symbol:	XKR3
Gene_synonyms:	MGC57211 XTES
Gene_source:	HGNC:28778

TATA-Box annotation

Distance to TSS:	-2060
Nearest PromoterID:	NR_003607
Entrez ID:	27437
Nearest Unigene:	Hs.143955
Nearest Refseq:	NR_003607
Nearest Ensembl:	ENSG00000229027
Gene Name:	XK related 3
Gene Alias:	CECR8\|HSFYL1\|HSFYP1\|NCRNA00016
Gene Type:	pseudo
CpG%:	0.000000
GC%:	0.300000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=HSFY1 pseudogene 1
 |gene_id=150165
-|gene_name=HSFY1P1
+|gene_name=XK related 3
 |gene_source=HGNC:28778
 |gene_symbol=XKR3
@@ Line 35: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=ENST00000684488.1 NM_001386955.1 NM_001386957.1 NM_001386956.1
+|transcript_name=ENST00000684488.1
 |tss_cluster_detected=1
 |tss_id=rfhg_227412.1