TSS: Rfhg 240105.1: Difference between revisions

Latest revision as of 06:46, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_240105.1
Species:	human
Chr:	chrX

Start:	152698786
End:	152698809
Strand:	+

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000370278.4:0 BC000340:0 BC016803:0 BC017389:0
GeneID:	4102
HGNC/MGI_ID:	HGNC:6801
UniProt_ID:	P43357
Nearer transcript ids and distances:	ENST00000417212.5:-19 ENST00000598245.2:-19 AK292384:-34 BC005963:-34 view more...

Gene_name:	MAGE family member A3
Gene_symbol:	MAGEA3
Gene_synonyms:	CT1.3 HIP8 HYPD MGC14613
Gene_source:	HGNC:6801

TATA-Box annotation

Distance to TSS:	3
Nearest PromoterID:	NM_005362
Entrez ID:	4102
Nearest Unigene:	Hs.417816
Nearest Refseq:	NM_005362
Nearest Ensembl:	ENSG00000221867
Gene Name:	MAGE family member A3
Gene Alias:	CT1.3\|HIP8\|HYPD\|MAGE3\|MAGEA6
Gene Type:	protein-coding
CpG%:	0.173913
GC%:	0.791667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=MAGE family member A3
 |gene_id=4102
-|gene_name=MAGEA3
+|gene_name=MAGE family member A3
 |gene_source=HGNC:6801
 |gene_symbol=MAGEA3
@@ Line 35: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENST00000370278.4 NM_005362.4 BC000340 BC016803 BC017389
+|transcript_name=ENST00000370278.4 BC000340 BC016803 BC017389
 |tss_cluster_detected=2
 |tss_id=rfhg_240105.1