TSS: Rfhg 3070.1: Difference between revisions

Latest revision as of 09:06, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_3070.1
Species:	human
Chr:	chr1

Start:	22025846
End:	22025860
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	pELS,CTCF-bound (EH38D2137195,EH38E1326685)
Category:	pELS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000455966.2:-188 BC039533:-188
GeneID:	101928043
HGNC/MGI_ID:	HGNC:52422
UniProt_ID:
Nearer transcript ids and distances:	ENST00000655353.1:354 ENST00000667783.1:363 ENST00000635097.2:365 ENST00000657670.1:369 ENST00000655655.1:384 view more...

Gene_name:	long intergenic non-protein coding RNA 1635
Gene_symbol:	LINC01635
Gene_synonyms:
Gene_source:	HGNC:52422

TATA-Box annotation

Distance to TSS:	195
Nearest PromoterID:	NR_110692
Entrez ID:	101928043
Nearest Unigene:	Hs.617422
Nearest Refseq:	NR_110692
Nearest Ensembl:	ENSG00000228397
Gene Name:	long intergenic non-protein coding RNA 1635
Gene Alias:	-
Gene Type:	ncRNA
CpG%:	0.071429
GC%:	0.600000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=long intergenic non-protein coding RNA 1635
 |gene_id=101928043
-|gene_name=LINC01635
+|gene_name=long intergenic non-protein coding RNA 1635
 |gene_source=HGNC:52422
 |gene_symbol=LINC01635
@@ Line 35: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=ENST00000455966.2 NR_110692.1 BC039533
+|transcript_name=ENST00000455966.2 BC039533
 |tss_cluster_detected=1
 |tss_id=rfhg_3070.1