TSS: Rfhg 39338.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
No edit summary
 
Line 16: Line 16:
|gene_description=SPEG neighbor
|gene_description=SPEG neighbor
|gene_id=100996693
|gene_id=100996693
|gene_name=SPEGNB
|gene_name=SPEG neighbor
|gene_source=HGNC:51251
|gene_source=HGNC:51251
|gene_symbol=SPEGNB
|gene_symbol=SPEGNB
Line 35: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000651166.2 NM_001286811.2
|transcript_name=ENST00000651166.2
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_39338.1
|tss_id=rfhg_39338.1

Latest revision as of 11:46, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_39338.1
Species:human
Chr:chr2
Start:219496129
End:219496133
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000651166.2:0
GeneID:100996693
HGNC/MGI_ID:HGNC:51251
UniProt_ID:A0A087WV53
Nearer transcript ids and distances:
  • ENST00000617028.1:222
Gene_name:SPEG neighbor
Gene_symbol:SPEGNB
Gene_synonyms:
Gene_source:HGNC:51251



TATA-Box annotation

Distance to TSS:-224
Nearest PromoterID:NM_001286811
Entrez ID:100996693
Nearest Unigene:Hs.21639
Nearest Refseq:NM_001286811
Nearest Ensembl:ENSG00000286095
Gene Name:SPEG neighbor
Gene Alias:-
Gene Type:protein-coding
CpG%:0.000000
GC%:0.800000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_39338.1&oldid=3742393"