TSS: Rfhg 44421.1: Difference between revisions
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|gene_description=long intergenic non-protein coding RNA 1988 | |gene_description=long intergenic non-protein coding RNA 1988 | ||
|gene_id=102724231 | |gene_id=102724231 | ||
|gene_name= | |gene_name=chromosome 3 open reading frame 86, pseudogene | ||
|gene_source=HGNC:44570 | |gene_source=HGNC:44570 | ||
|gene_symbol=C3orf86P | |gene_symbol=C3orf86P | ||
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|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000636468 | |transcript_name=ENST00000636468.1 | ||
|tss_cluster_detected=5 | |tss_cluster_detected=5 | ||
|tss_id=rfhg_44421.1 | |tss_id=rfhg_44421.1 | ||
Latest revision as of 13:20, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|PRJNA401781|PRJNA597322 | |||||||||||||||
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| Protocol | CAGE|RAMPAGE|oligo_capping|STRIPE-seq | |||||||||||||||
| TSS cluster detected* | 5 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D3420536,EH38E2196677) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 11967 |
|---|---|
| Nearest PromoterID: | NR_144436 |
| Entrez ID: | 100506319 |
| Nearest Unigene: | Hs.180744 |
| Nearest Refseq: | NR_144436 |
| Nearest Ensembl: | ENSG00000283036 |
| Gene Name: | chromosome 3 open reading frame 86, pseudogene |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.011494 |
| GC%: | 0.454545 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.