TSS: Rfhg 45578.1: Difference between revisions

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|gene_description=DDB1 and CUL4 associated factor 1
|gene_description=DDB1 and CUL4 associated factor 1
|gene_id=9730
|gene_id=9730
|gene_name=DCAF1
|gene_name=DDB1 and CUL4 associated factor 1
|gene_source=HGNC:30911
|gene_source=HGNC:30911
|gene_symbol=DCAF1
|gene_symbol=DCAF1
Line 35: Line 35:
|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000423656.5 ENST00000504652.5 ENST00000684031.1 NM_001387581.1 NM_014703.3 NM_001171904.2 NR_170668.1 NR_146065.2 NM_001387578.1 NM_001349169.2 NM_001387583.1 NM_001387579.1 NM_001387580.1 NM_001349168.2 NM_001349170.2 NM_001387582.1 NM_001349171.2 AB018343 BC110371
|transcript_name=ENST00000423656.5 ENST00000504652.5 ENST00000684031.1 AB018343 BC110371
|tss_cluster_detected=13
|tss_cluster_detected=13
|tss_id=rfhg_45578.1
|tss_id=rfhg_45578.1

Latest revision as of 13:42, 15 March 2025

Basic information about the TSS


TSS ID:rfhg_45578.1
TSS ID(Version3):hg_42365.1
Species:human
Chr:chr3
Start:51499951
End:51500035
Strand:-
Source datasetsFANTOM5|EPD|DRA000914|ENCODE|PRJNA401781|PRJNA548673
|PRJNA615891|PRJNA4843412|DRA013844
ProtocolCAGE|TSS_database|RAMPAGE|ReCappable-seq|SLIC_CAGE
|oligo_capping|TIF-seq2|NETCAGE
TSS cluster detected*13

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D3427064,EH38E2201668)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENST00000423656.5:0
ENST00000504652.5:0
ENST00000684031.1:0
AB018343:0
BC110371:0
GeneID:9730
HGNC/MGI_ID:HGNC:30911
UniProt_ID:Q9Y4B6
Nearer transcript ids and distances:
  • BC022792:60
Gene_name:DDB1 and CUL4 associated factor 1
Gene_symbol:DCAF1
Gene_synonyms:KIAA0800 MGC102804
Gene_source:HGNC:30911



TATA-Box annotation


Distance to TSS:9
Nearest PromoterID:NM_001171904
Entrez ID:9730
Nearest Unigene:Hs.716623
Nearest Refseq:NM_014703
Nearest Ensembl:ENSG00000145041
Gene Name:DDB1 and CUL4 associated factor 1
Gene Alias:RIP|VPRBP
Gene Type:protein-coding
CpG%:0.107143
GC%:0.611765
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.