TSS: Rfhg 71087.1: Difference between revisions

Latest revision as of 21:47, 15 March 2025

Basic information about the TSS

TSS ID:	rfhg_71087.1
Species:	human
Chr:	chr5

Start:	115841531
End:	115841551
Strand:	+

Source datasets

ENCODE

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3747219,EH38E2400777)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000514118.5:41
GeneID:	1176
HGNC/MGI_ID:	HGNC:2013
UniProt_ID:
Nearer transcript ids and distances:	ENST00000316788.12:384 NM_001318090.2:384 NM_001318091.2:384 NM_001318094.2:384 NM_001284.4:384 NM_001318093.2:384 NM_001002924.3:384 ENST00000515066.6:395 NM_001364122.1:395 NM_001364120.1:395 NM_001364119.1:395 NR_157086.1:395 NR_157084.1:395 NR_157085.1:395 BX647735:395 U91932:402 BC000804:403 ENST00000506430.2:407 D63643:442 ENST00000395548.6:446 BC012614:446 X99458:457 DQ894381:485 DQ891198:485 KJ890926:486 CR450341:487 BT009833:487 AK311843:487 view more...

Gene_name:	adaptor related protein complex 3 subunit sigma 1
Gene_symbol:	AP3S1
Gene_synonyms:
Gene_source:	HGNC:2013

TATA-Box annotation

Distance to TSS:	24
Nearest PromoterID:	NM_001277783
Entrez ID:	9140
Nearest Unigene:	Hs.264482
Nearest Refseq:	NM_004707
Nearest Ensembl:	ENSG00000145782
Gene Name:	adaptor related protein complex 3 subunit sigma 1
Gene Alias:	APG12\|APG12L\|FBR93\|HAPG12
Gene Type:	protein-coding
CpG%:	0.100000
GC%:	0.714286
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

Property "Nearest transcripts" (as page type) with input value "ENST00000316788.12:384 NM_001318090.2:384 NM_001318091.2:384 NM_001318094.2:384 NM_001284.4:384 NM_001318093.2:384 NM_001002924.3:384 ENST00000515066.6:395 NM_001364122.1:395 NM_001364120.1:395 NM_001364119.1:395 NR_157086.1:395 NR_157084.1:395 NR_157085.1:395 BX647735:395 U91932:402 BC000804:403 ENST00000506430.2:407 D63643:442 ENST00000395548.6:446 BC012614:446 X99458:457 DQ894381:485 DQ891198:485 KJ890926:486 CR450341:487 BT009833:487 AK311843:487" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

@@ Line 16: / Line 16: @@
 |gene_description=autophagy related 12
 |gene_id=1176
-|gene_name=ATG12
+|gene_name=adaptor related protein complex 3 subunit sigma 1
 |gene_source=HGNC:2013
 |gene_symbol=AP3S1