TSS: Rfhg 73107.1: Difference between revisions

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|gene_description=protocadherin alpha 4
|gene_description=protocadherin alpha 4
|gene_id=56144
|gene_id=56144
|gene_name=PCDHA4
|gene_name=protocadherin alpha 4
|gene_source=HGNC:8670
|gene_source=HGNC:8670
|gene_symbol=PCDHA4
|gene_symbol=PCDHA4
Line 35: Line 35:
|strand=+
|strand=+
|tata_box=
|tata_box=
|transcript_name=ENST00000530339.2 ENST00000512229.6 ENST00000672575.1 NM_031500.3 NM_018907.4 AB208925
|transcript_name=ENST00000530339.2 ENST00000512229.6 ENST00000672575.1 AB208925
|tss_cluster_detected=2
|tss_cluster_detected=2
|tss_id=rfhg_73107.1
|tss_id=rfhg_73107.1

Latest revision as of 22:25, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_73107.1
Species:human
Chr:chr5
Start:140807063
End:140807087
Strand:+
Source datasetsFANTOM5|EPD
ProtocolCAGE|TSS_database
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3767751,EH38E2414484)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000530339.2:0
ENST00000512229.6:0
ENST00000672575.1:0
AB208925:0
GeneID:56144
HGNC/MGI_ID:HGNC:8670
UniProt_ID:A0A5F9ZHY0 D6RA20 Q59H34 Q9UN74
Nearer transcript ids and distances:
  • BC112102:15
  • BC113609:15
  • ENST00000618834.1:-26
  • HQ258500:101
  • KJ894314:101
  • AF152482:101
  • AF152312:101
  • ENST00000378125.4:-134
view more...
Gene_name:protocadherin alpha 4
Gene_symbol:PCDHA4
Gene_synonyms:CNR1 CNRN1 CRNR1 PCDH-ALPHA4
Gene_source:HGNC:8670



TATA-Box annotation

Distance to TSS:7
Nearest PromoterID:NM_031500
Entrez ID:56144
Nearest Unigene:Hs.199343
Nearest Refseq:NM_018907
Nearest Ensembl:ENSG00000204967
Gene Name:protocadherin alpha 4
Gene Alias:CNR1|CNRN1|CRNR1|PCDH-ALPHA4
Gene Type:protein-coding
CpG%:0.000000
GC%:0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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