TSS: Rfhg 76730.1: Difference between revisions

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|gene_description=TBC1 domain family member 9B
|gene_description=TBC1 domain family member 9B
|gene_id=23061
|gene_id=23061
|gene_name=TBC1D9B
|gene_name=TBC1 domain family member 9B
|gene_source=HGNC:29097
|gene_source=HGNC:29097
|gene_symbol=TBC1D9B
|gene_symbol=TBC1D9B
Line 35: Line 35:
|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=ENST00000356834.7 ENST00000355235.8 ENST00000522224.3 ENST00000630103.1 NM_198868.3 NM_015043.4 AB014576 BC129994 AB449893 AB463306
|transcript_name=ENST00000356834.7 ENST00000355235.8 ENST00000522224.3 ENST00000630103.1 AB014576 BC129994 AB449893 AB463306
|tss_cluster_detected=10
|tss_cluster_detected=10
|tss_id=rfhg_76730.1
|tss_id=rfhg_76730.1

Latest revision as of 23:33, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_76730.1
TSS ID(Version3):hg_65269.1
Species:human
Chr:chr5
Start:179907792
End:179907911
Strand:-
Source datasetsFANTOM5|EPD|PRJDB5282|PRJNA597322|PRJNA401781|PRJNA615891
|PRJNA548673|PRJNA4843412|DRA013844
ProtocolCAGE|TSS_database|C1CAGE|STRIPE-seq|SLIC_CAGE
|ReCappable-seq|TIF-seq2|NETCAGE
TSS cluster detected*10

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3800996,EH38E2437229)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000356834.7:0
ENST00000355235.8:0
ENST00000522224.3:0
ENST00000630103.1:0
AB014576:0
BC129994:0
AB449893:0
AB463306:0
GeneID:23061
HGNC/MGI_ID:HGNC:29097
UniProt_ID:A1L3A9 B9A6K8 E5RIN2 Q66K14
Nearer transcript ids and distances:
    Gene_name:TBC1 domain family member 9B
    Gene_symbol:TBC1D9B
    Gene_synonyms:GRAMD9B KIAA0676
    Gene_source:HGNC:29097



    TATA-Box annotation

    Distance to TSS:46
    Nearest PromoterID:NM_198868
    Entrez ID:23061
    Nearest Unigene:Hs.155829
    Nearest Refseq:NM_015043
    Nearest Ensembl:ENSG00000197226
    Gene Name:TBC1 domain family member 9B
    Gene Alias:GRAMD9B
    Gene Type:protein-coding
    CpG%:0.184874
    GC%:0.783333
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.
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