TSS: Rfhg 80042.1: Difference between revisions

Latest revision as of 00:33, 16 March 2025

Basic information about the TSS

TSS ID:	rfhg_80042.1
Species:	human
Chr:	chr6

Start:	30075763
End:	30075777
Strand:	-

Source datasets

FANTOM5|EPD

Protocol

CAGE|TSS_database

TSS cluster detected^*

2

* The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

Description:	PLS,CTCF-bound (EH38D3829909,EH38E2458085)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENST00000244360.8:0
GeneID:	80352
HGNC/MGI_ID:	HGNC:18064
UniProt_ID:	Q9H2S5
Nearer transcript ids and distances:	BC111601:-12 AB464177:-12 ENST00000376751.8:-72 AF238316:-72 AF238315:-74 AF238317:-74 LF210825:-251 MA446402:-251 LF341402:494 MA576979:494 view more...

Gene_name:	ring finger protein 39
Gene_symbol:	RNF39
Gene_synonyms:	FAP216 HZFw1 LIRF
Gene_source:	HGNC:18064

TATA-Box annotation

Distance to TSS:	79
Nearest PromoterID:	NM_170769
Entrez ID:	80352
Nearest Unigene:	Hs.121178
Nearest Refseq:	NM_025236
Nearest Ensembl:	ENSG00000204618
Gene Name:	ring finger protein 39
Gene Alias:	HZF\|HZFW\|LIRF
Gene Type:	protein-coding
CpG%:	0.071429
GC%:	0.466667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=ring finger protein 39
 |gene_id=80352
-|gene_name=RNF39
+|gene_name=ring finger protein 39
 |gene_source=HGNC:18064
 |gene_symbol=RNF39
@@ Line 35: / Line 35: @@
 |strand=-
 |tata_box=
-|transcript_name=ENST00000244360.8 NM_025236.4 NM_170769.3 LF341401 MA576978
+|transcript_name=ENST00000244360.8
 |tss_cluster_detected=2
 |tss_id=rfhg_80042.1