TSS: Rfhg 80461.1: Difference between revisions

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|gene_description=psoriasis susceptibility 1 candidate 3
|gene_description=psoriasis susceptibility 1 candidate 3
|gene_id=100130889
|gene_id=100130889
|gene_name=PSORS1C3
|gene_name=psoriasis susceptibility 1 candidate 3
|gene_source=HGNC:17203
|gene_source=HGNC:17203
|gene_symbol=PSORS1C3
|gene_symbol=PSORS1C3
Line 35: Line 35:
|strand=-
|strand=-
|tata_box=
|tata_box=
|transcript_name=NR_152834.1 NR_152829.1 NR_152838.1 NR_152833.1 NR_152828.1 NR_152837.1 NR_152830.1 NR_152836.1 NR_026816.2 NR_152839.1 NR_152832.1 NR_152831.1 NR_152835.1 LC027945 LC027946 LC050979 LC050980 LC050981 LC050982 LC050983 LC050984 LC050985 LC050986 LC050987 LC050988 LC050989 LC050990 LC050991
|transcript_name=LC027945 LC027946 LC050979 LC050980 LC050981 LC050982 LC050983 LC050984 LC050985 LC050986 LC050987 LC050988 LC050989 LC050990 LC050991
|tss_cluster_detected=1
|tss_cluster_detected=1
|tss_id=rfhg_80461.1
|tss_id=rfhg_80461.1

Latest revision as of 00:42, 16 March 2025

Basic information about the TSS

TSS ID:rfhg_80461.1
Species:human
Chr:chr6
Start:31186395
End:31186408
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:dELS (EH38D3830969,EH38E2458966)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:LC027945:78
LC027946:78
LC050979:78
LC050980:78
LC050981:78
LC050982:78
LC050983:78
LC050984:78
LC050985:78
LC050986:78
LC050987:78
LC050988:78
LC050989:78
LC050990:78
LC050991:78
GeneID:100130889
HGNC/MGI_ID:HGNC:17203
UniProt_ID:
Nearer transcript ids and distances:
  • KY781167:193
Gene_name:psoriasis susceptibility 1 candidate 3
Gene_symbol:PSORS1C3
Gene_synonyms:NCRNA00196
Gene_source:HGNC:17203



TATA-Box annotation

Distance to TSS:-84
Nearest PromoterID:NR_152836
Entrez ID:100130889
Nearest Unigene:Hs.670091
Nearest Refseq:NM_001134284
Nearest Ensembl:
Gene Name:psoriasis susceptibility 1 candidate 3
Gene Alias:NCRNA00196
Gene Type:ncRNA
CpG%:0.000000
GC%:0.571429
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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