TSS: Hg 112224.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.155 |distance_to_tss=60 |entrez_id=57661 |gc_percent=0.731343 |gene_alias=PPP1R125|RNF221 |gene_description=PHD and ring finger domains 1 |gene_name...") |
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{{TSSDetail | {{TSSDetail | ||
|RNF221= | |||
|all_trans=AK308541:0 ENST00000533464.5:3 ENST00000413872.6:3 ENST00000416188.2:3 uc010qwd.4:3 uc010qwc.4:3 uc010qwe.4:3 BC136615:3 BC144293:3 BC144294:3 BC144295:3 ENST00000534320.5:-9 ENST00000264555.9:-9 uc057xil.1:-9 uc001lqe.5:-9 AB040975:-9 BC146771:-9 BC112931:12 NM_001286583:-49 NM_001286582:-49 NM_001286581:-49 NM_020901:-49 | |||
|chr=chr11 | |||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
|distance=0 | |||
|distance_to_tss=60 | |distance_to_tss=60 | ||
|end=576518 | |||
|entrez_id=57661 | |entrez_id=57661 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_020901 | |nearest_refseq=NM_020901 | ||
|nearest_unigene=Hs.325838 | |nearest_unigene=Hs.325838 | ||
|num_trans=22 | |||
|species=human | |||
|start=576494 | |||
|strand=+ | |||
|transcript_name=AK308541 | |||
|tss_classification=yes | |||
|tss_id=hg_112224.1 | |tss_id=hg_112224.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 02:26, 9 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 60 |
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| Nearest PromoterID: | NM_001286583 |
| Entrez ID: | 57661 |
| Nearest Unigene: | Hs.325838 |
| Nearest Refseq: | NM_020901 |
| Nearest Ensembl: | ENSG00000070047 |
| Gene Name: | PHRF1 |
| Gene Alias: | PPP1R125 |
| Gene Description: | PHD and ring finger domains 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |