TSS: Rfmm 163380.1: Difference between revisions

Latest revision as of 10:11, 19 March 2025

Basic information about the TSS

TSS ID:	rfmm_163380.1
Species:	mouse
Chr:	chr19

Start:	27239665
End:	27239673
Strand:	-

Source datasets

FANTOM5

Protocol

CAGE

TSS cluster detected^*

1

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	-
Category:	-

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000235357.2:-50 AK086006:-50
GeneID:	100042588
HGNC/MGI_ID:	MGI:3782090 MGI:6302852
UniProt_ID:
Nearer transcript ids and distances:

Gene_name:	predicted gene 3916; predicted gene, 50114
Gene_symbol:	Gm3916 Gm50114
Gene_synonyms:
Gene_source:	MGI:3782090 MGI:6302852

TATA-Box annotation

Distance to TSS:	2027
Nearest PromoterID:	XR_106015.6
Entrez ID:	Gm35438
Nearest Unigene:	XR_003952921
Nearest Refseq:
Nearest Ensembl:
Gene Name:	predicted gene 3916; predicted gene, 50114
Gene Alias:
Gene Type:
CpG%:	0.000000
GC%:	0.444444
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=
 |gene_id=100042588
-|gene_name=Gm35438
+|gene_name=predicted gene 3916; predicted gene, 50114
 |gene_source=MGI:3782090 MGI:6302852
 |gene_symbol=Gm3916 Gm50114