TSS: Rfmm 42822.1: Difference between revisions

Latest revision as of 19:39, 19 March 2025

Basic information about the TSS

TSS ID:	rfmm_42822.1
Species:	mouse
Chr:	chr5

Start:	8848140
End:	8848164
Strand:	+

Source datasets

PRJDB10397|GSE117655|DRA000914

Protocol

C1CAGE|deepCAGE|CAGE_and_CAGEscan

TSS cluster detected^*

3

* The number of TSS cluster called data-sets (maximum 5)

cCREs annotation

Description:	PLS (EM10D2767439,EM10E1141169)
Category:	PLS

* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

Nearest transcript id and distance:	ENSMUST00000199955.5:0 ENSMUST00000196580.5:0 AK030328:0
GeneID:	18669
HGNC/MGI_ID:	MGI:97568
UniProt_ID:	A0A0G2JGL4
Nearer transcript ids and distances:	ENSMUST00000009058.10:22 M14757:22 BC141363:27 BC150811:27 LF194841:-39 MA430418:-39 view more...

Gene_name:	ATP-binding cassette, sub-family B (MDR/TAP), member 1B
Gene_symbol:	Abcb1b
Gene_synonyms:	Abcb1 Mdr1 Mdr1b Pgy-1 Pgy1 mdr
Gene_source:	MGI:97568

TATA-Box annotation

Distance to TSS:	5
Nearest PromoterID:	NM_011075.2
Entrez ID:	Abcb1b
Nearest Unigene:	NM_011075
Nearest Refseq:
Nearest Ensembl:
Gene Name:	ATP-binding cassette, sub-family B (MDR/TAP), member 1B
Gene Alias:
Gene Type:
CpG%:	0.041667
GC%:	0.720000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 16: / Line 16: @@
 |gene_description=
 |gene_id=18669
-|gene_name=Abcb1b
+|gene_name=ATP-binding cassette, sub-family B (MDR/TAP), member 1B
 |gene_source=MGI:97568
 |gene_symbol=Abcb1b
@@ Line 35: / Line 35: @@
 |strand=+
 |tata_box=
-|transcript_name=ENSMUST00000199955.5 ENSMUST00000196580.5 NM_011075.2 AK030328
+|transcript_name=ENSMUST00000199955.5 ENSMUST00000196580.5 AK030328
 |tss_cluster_detected=3
 |tss_id=rfmm_42822.1