TSS: Hg 113006.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.075 |distance_to_tss=96 |entrez_id=23075 |gc_percent=0.706468 |gene_alias=HSPC321|SWAP-70 |gene_description=SWAP switching B-cell complex subunit 70...") |
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{{TSSDetail | {{TSSDetail | ||
|SWAP-70= | |||
|all_trans=KJ893325:1 AB383933:2 CU674300:3 AF210818:4 ENST00000524817.5:-36 uc057yyk.1:-36 BC000134:-36 AK304104:37 AB014540:-46 AF134894:-65 BC000616:-67 ENST00000531814.5:-69 uc057yyj.1:-69 ENST00000526358.5:-90 uc057yyi.1:-90 ENST00000447399.6:-94 ENST00000318950.10:-94 NM_001297714:-94 NM_015055:-94 uc001mhx.4:-94 uc001mhw.4:-94 AK096859:-94 | |||
|chr=chr11 | |||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
|distance=1 | |||
|distance_to_tss=96 | |distance_to_tss=96 | ||
|end=9664176 | |||
|entrez_id=23075 | |entrez_id=23075 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_015055 | |nearest_refseq=NM_015055 | ||
|nearest_unigene=Hs.153026 | |nearest_unigene=Hs.153026 | ||
|num_trans=22 | |||
|species=human | |||
|start=9664170 | |||
|strand=+ | |||
|transcript_name=KJ893325 | |||
|tss_classification=yes | |||
|tss_id=hg_113006.1 | |tss_id=hg_113006.1 | ||
|tss_score=1 | |||
}} | }} | ||
Revision as of 02:59, 9 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 96 |
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| Nearest PromoterID: | NM_015055 |
| Entrez ID: | 23075 |
| Nearest Unigene: | Hs.153026 |
| Nearest Refseq: | NM_015055 |
| Nearest Ensembl: | ENSG00000133789 |
| Gene Name: | SWAP70 |
| Gene Alias: | HSPC321 |
| Gene Description: | SWAP switching B-cell complex subunit 70 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |