TSS: Hg 120314.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|H-REV107-1= | |||
|HRASLS3= | |||
|HREV107= | |||
|HREV107-1= | |||
|HREV107-3= | |||
|HRSL3= | |||
|all_trans=ENST00000394613.3:83 uc058crd.1:83 BC103807:83 BC103808:83 ENST00000323646.9:-114 uc001nxh.4:-114 BC001387:-114 X92814:-166 AF317086:173 AB030814:178 AK313075:-181 NM_007069:-182 ENST00000415826.1:-214 NM_001128203:-214 uc009you.3:-214 AB439591:227 DQ892568:227 KJ893234:227 DQ895783:227 AB528317:227 | |||
|chr=chr11 | |||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=83 | |||
|distance_to_tss=189 | |distance_to_tss=189 | ||
|end=63614255 | |||
|entrez_id=11145 | |entrez_id=11145 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
|gene_alias=AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3 | |gene_alias=AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3 | ||
|gene_description=phospholipase A2 group XVI | |gene_description=phospholipase A2 group XVI | ||
|gene_name=PLA2G16 | |gene_id=11145 | ||
|gene_name=phospholipase A2 group XVI | |||
|gene_source=HGNC:17825 | |||
|gene_symbol=PLA2G16 | |||
|gene_synonyms=AdPLA H-REV107-1 HREV107 HREV107-3 MGC118754. | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:17825 | |||
|nearest_ensembl=ENSG00000176485 | |nearest_ensembl=ENSG00000176485 | ||
|nearest_promoter_id=NM_007069 | |nearest_promoter_id=NM_007069 | ||
|nearest_refseq=NM_007069 | |nearest_refseq=NM_007069 | ||
|nearest_unigene=Hs.502775 | |nearest_unigene=Hs.502775 | ||
|num_trans=20 | |||
|species=human | |||
|start=63614240 | |||
|strand=- | |||
|transcript_name=ENST00000394613.3 uc058crd.1 BC103807 BC103808 | |||
|tss_classification=yes | |||
|tss_id=hg_120314.1 | |tss_id=hg_120314.1 | ||
|tss_score=1 | |||
|uniprot_id=Q3MI98 | |||
}} | }} | ||
Revision as of 08:11, 9 March 2018
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 189 |
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| Nearest PromoterID: | NM_007069 |
| Entrez ID: | 11145 |
| Nearest Unigene: | Hs.502775 |
| Nearest Refseq: | NM_007069 |
| Nearest Ensembl: | ENSG00000176485 |
| Gene Name: | phospholipase A2 group XVI |
| Gene Alias: | AdPLA |
| Gene Description: | phospholipase A2 group XVI |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.