TSS: Hg 120322.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=5 |entrez_id=11145 |gc_percent=0.761194 |gene_alias=AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3 |gene_descriptio...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|H-REV107-1= | |||
|HRASLS3= | |||
|HREV107= | |||
|HREV107-1= | |||
|HREV107-3= | |||
|HRSL3= | |||
|all_trans=ENST00000415826.1:0 NM_001128203:0 uc009you.3:0 NM_007069:17 AK313075:18 X92814:33 ENST00000323646.9:85 uc001nxh.4:85 BC001387:85 ENST00000394613.3:296 uc058crd.1:296 BC103807:296 BC103808:296 AF317086:386 AB030814:391 AB439591:440 DQ892568:440 KJ893234:440 DQ895783:440 AB528317:440 | |||
|chr=chr11 | |||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
|distance=0 | |||
|distance_to_tss=5 | |distance_to_tss=5 | ||
|end=63614474 | |||
|entrez_id=11145 | |entrez_id=11145 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
|gene_alias=AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3 | |gene_alias=AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3 | ||
|gene_description=phospholipase A2 group XVI | |gene_description=phospholipase A2 group XVI | ||
|gene_name=PLA2G16 | |gene_id=11145 | ||
|gene_name=phospholipase A2 group XVI | |||
|gene_source=HGNC:17825 | |||
|gene_symbol=PLA2G16 | |||
|gene_synonyms=AdPLA H-REV107-1 HREV107 HREV107-3 MGC118754. | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:17825 | |||
|nearest_ensembl=ENSG00000176485 | |nearest_ensembl=ENSG00000176485 | ||
|nearest_promoter_id=NM_001128203 | |nearest_promoter_id=NM_001128203 | ||
|nearest_refseq=NM_007069 | |nearest_refseq=NM_007069 | ||
|nearest_unigene=Hs.502775 | |nearest_unigene=Hs.502775 | ||
|num_trans=20 | |||
|species=human | |||
|start=63614453 | |||
|strand=- | |||
|transcript_name=ENST00000415826.1 NM_001128203 uc009you.3 | |||
|tss_classification=yes | |||
|tss_id=hg_120322.1 | |tss_id=hg_120322.1 | ||
|tss_score=1 | |||
|uniprot_id=A0A024R561 P53816 | |||
}} | }} | ||
Revision as of 08:11, 9 March 2018
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_001128203 |
| Entrez ID: | 11145 |
| Nearest Unigene: | Hs.502775 |
| Nearest Refseq: | NM_007069 |
| Nearest Ensembl: | ENSG00000176485 |
| Gene Name: | phospholipase A2 group XVI |
| Gene Alias: | AdPLA |
| Gene Description: | phospholipase A2 group XVI |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.