TSS: Mm 24735.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|4930504E06Rik= | |||
|AA562754= | |||
|AA960384= | |||
|AW561904= | |||
|all_trans=ENSMUST00000135264.1:7 AK162551:7 AK087859:-74 BC094388:-79 uc029uno.1:155 AK202263:155 AK204834:161 AK205089:161 AK180852:164 ENSMUST00000039537.13:-253 ENSMUST00000107187.8:-253 AK036838:-253 AK169673:-261 NM_199475:-262 NM_133858:-262 uc008qjb.1:-277 uc008qjc.1:-277 uc008qjd.2:-277 uc008qje.2:-277 ENSMUST00000137743.7:394 AK213681:394 AK213538:394 AK215508:394 AK193471:394 AK218735:394 AK179473:394 AK179897:394 AK195238:397 | |all_trans=ENSMUST00000135264.1:7 AK162551:7 AK087859:-74 BC094388:-79 uc029uno.1:155 AK202263:155 AK204834:161 AK205089:161 AK180852:164 ENSMUST00000039537.13:-253 ENSMUST00000107187.8:-253 AK036838:-253 AK169673:-261 NM_199475:-262 NM_133858:-262 uc008qjb.1:-277 uc008qjc.1:-277 uc008qjd.2:-277 uc008qje.2:-277 ENSMUST00000137743.7:394 AK213681:394 AK213538:394 AK215508:394 AK193471:394 AK218735:394 AK179473:394 AK179897:394 AK195238:397 | ||
|cI-40= | |||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
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|distance_to_tss=267 | |distance_to_tss=267 | ||
|end=95283208 | |end=95283208 | ||
|end_of_center_position=95283203 | |||
|entrez_id=75007 | |entrez_id=75007 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
|gene_alias=1810005H09Rik | |gene_alias=1810005H09Rik | ||
|gene_description="family with sequence similarity 63, member A" | |gene_description="family with sequence similarity 63, member A" | ||
|gene_id=75007 | |gene_id=75007 | ||
| Line 17: | Line 23: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1922257 | |hgnc_mgi_id=MGI:1922257 | ||
|mKIAA1390= | |||
|nearest_ensembl=ENSMUSG00000038712 | |nearest_ensembl=ENSMUSG00000038712 | ||
|nearest_promoter_id=NM_199475 | |nearest_promoter_id=NM_199475 | ||
|nearest_refseq=NM_133858 | |nearest_refseq=NM_133858 | ||
|nearest_unigene=Mm.279287 | |nearest_unigene=Mm.279287 | ||
|ni= | |||
|num_trans=28 | |num_trans=28 | ||
|species=mouse | |species=mouse | ||
|start=95283196 | |start=95283196 | ||
|start_of_center_position=95283202 | |||
|strand=+ | |strand=+ | ||
|transcript_name=ENSMUST00000135264.1 AK162551 | |transcript_name=ENSMUST00000135264.1 AK162551 | ||
Revision as of 19:39, 10 May 2019
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 267 |
|---|---|
| Nearest PromoterID: | NM_199475 |
| Entrez ID: | 75007 |
| Nearest Unigene: | Mm.279287 |
| Nearest Refseq: | NM_133858 |
| Nearest Ensembl: | ENSMUSG00000038712 |
| Gene Name: | "family with sequence similarity 63, member A" |
| Gene Alias: | 1810005H09Rik |
| Gene Description: | "family with sequence similarity 63, member A" |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.