TSS: Hg 28300.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |chr=chr2 |cpg_percent=0 |distance= |distance_to_tss=-117915 |end=50465681 |entrez_id=9378 |gc_percent=0.328358 |gene_alias=Hs.22998|PTHSL2|SCZD17 |gene_descriptio...") |
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{{TSSDetail | {{TSSDetail | ||
|PTHSL2= | |||
|SCZD17= | |||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| Line 5: | Line 7: | ||
|distance_to_tss=-117915 | |distance_to_tss=-117915 | ||
|end=50465681 | |end=50465681 | ||
|end_of_center_position=50465671 | |||
|entrez_id=9378 | |entrez_id=9378 | ||
|gc_percent=0.328358 | |gc_percent=0.328358 | ||
|gene_alias=Hs.22998 | |gene_alias=Hs.22998 | ||
|gene_description=neurexin 1 | |gene_description=neurexin 1 | ||
|gene_name=NRXN1 | |gene_name=NRXN1 | ||
| Line 18: | Line 21: | ||
|species=human | |species=human | ||
|start=50465660 | |start=50465660 | ||
|start_of_center_position=50465670 | |||
|strand=- | |strand=- | ||
|tata_box="-16(AACTTTAAAAAC,-,0.00),69(TTCTTTTAAAGA,-,0.00),70(TCTTTTAAAGAA,+,0.00)" | |tata_box="-16(AACTTTAAAAAC,-,0.00),69(TTCTTTTAAAGA,-,0.00),70(TCTTTTAAAGAA,+,0.00)" | ||
Revision as of 10:18, 11 May 2019
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -117915 |
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| Nearest PromoterID: | NM_138735 |
| Entrez ID: | 9378 |
| Nearest Unigene: | Hs.637685 |
| Nearest Refseq: | NM_004801 |
| Nearest Ensembl: | ENSG00000179915 |
| Gene Name: | NRXN1 |
| Gene Alias: | Hs.22998 |
| Gene Description: | neurexin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.328358 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-16(AACTTTAAAAAC,-,0.00),69(TTCTTTTAAAGA,-,0.00),70(TCTTTTAAAGAA,+,0.00)" |