TSS: Hg 28437.1: Difference between revisions

Revision as of 10:42, 11 May 2019

Basic information about the TSS

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 16)

Gene and protein annotation

TATA-Box annotation

Distance to TSS:	97
Nearest PromoterID:	NM_207520
Entrez ID:	57142
Nearest Unigene:	Hs.637850
Nearest Refseq:	NM_007008
Nearest Ensembl:	ENSG00000115310
Gene Name:	RTN4
Gene Alias:	ASY
Gene Description:	reticulon 4
Gene Type:	protein-coding
CpG%:	0.075
GC%:	0.696517
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):

@@ Line 1: / Line 1: @@
 {{TSSDetail
+|NI220/250=
+|NOGO=
+|NOGO-A=
+|NOGOC=
+|NSP=
+|NSP-CL=
+|Nbla00271=
+|Nbla10545=
+|Nogo-B=
+|Nogo-C=
+|RTN-X=
+|RTN4-A=
+|RTN4-B1=
+|RTN4-B2=
+|RTN4-C=
 |all_trans=BC012335:0 BC026788:5 AF132047:12 AK075039:-19 ENST00000337526.10:-32 ENST00000317610.11:-32 ENST00000357732.8:-32 uc002ryg.4:-32 uc002rye.4:-32 uc002ryf.4:-32 AY102277:-32 AY102278:-32 AY102279:-32 AB040462:-32 AB040463:-32 AK129806:34 BC016165:-35 BC150182:-36 BC152555:-36 BC068991:-36 BC012619:40 AK098385:40 AF148537:50 AF148538:50 BC152425:57 AB020693:57 ENST00000394611.6:-86 NM_153828:-86 NM_207520:-86 NM_020532:-86 uc061jfb.1:-86 AY123246:-86 ENST00000402434.6:115 uc061jfg.1:115 BC071848:115 AB015639:125 AK130812:132 BC010737:186 AB384033:189 AM393104:189 AM393557:189 AF320999:191 AJ251383:191 AJ251384:191 CU687182:191 KJ894399:193 KJ894400:193 ENST00000404909.5:-316 uc061jfc.1:-316 AY123245:-316
 |chr=chr2
@@ Line 6: / Line 21: @@
 |distance_to_tss=97
 |end=55050512
+|end_of_center_position=55050502
 |entrez_id=57142
 |gc_percent=0.696517
-|gene_alias=ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C
+|gene_alias=ASY
 |gene_description=reticulon 4
 |gene_name=RTN4
@@ Line 19: / Line 35: @@
 |species=human
 |start=55050490
+|start_of_center_position=55050501
 |strand=-
 |transcript_name=BC012335