TSS: Hg 16013.1: Difference between revisions

Revision as of 13:31, 11 May 2019

Basic information about the TSS

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 16)

Gene and protein annotation

Gene_name:	"ring finger and WD repeat domain 2, E3 ubiquitin protein ligase"
Gene_symbol:	RFWD2
Gene_synonyms:	COP1 FLJ10416 RNF200
Gene_source:	HGNC:17440

TATA-Box annotation

Distance to TSS:	151
Nearest PromoterID:	NM_001001740
Entrez ID:	64326
Nearest Unigene:	Hs.523744
Nearest Refseq:	NM_022457
Nearest Ensembl:	ENSG00000143207
Gene Name:	"ring finger and WD repeat domain 2, E3 ubiquitin protein ligase"
Gene Alias:	COP1
Gene Description:	ring finger and WD repeat domain 2
Gene Type:	protein-coding
CpG%:	0.085
GC%:	0.631841
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetail
+|RNF200=
 |all_trans=ENST00000474194.1:0 uc057nnd.1:0 BC020845:-28 AK314750:-53 KJ894546:76 ENST00000308769.12:85 uc001gkv.3:85 AF508940:85 AY509921:85 KJ534928:85 KJ534929:85 KJ534930:85 KJ534931:85 KJ534932:85 KJ534933:85 KJ534992:85 KJ535061:85 KJ535076:85 BC094728:-109 AF527539:-118 NM_001286644:-121 NM_001001740:-121 NM_022457:-121 ENST00000367669.7:-370 uc001gku.3:-370 ENST00000367667.5:372 uc057nmv.1:372 BC039723:372
 |chr=chr1
@@ Line 6: / Line 7: @@
 |distance_to_tss=151
 |end=176207123
+|end_of_center_position=176207093
 |entrez_id=64326
 |gc_percent=0.631841
-|gene_alias=COP1|RNF200
+|gene_alias=COP1
 |gene_description=ring finger and WD repeat domain 2
 |gene_id=64326
@@ Line 24: / Line 26: @@
 |species=human
 |start=176207062
+|start_of_center_position=176207092
 |strand=-
 |transcript_name=ENST00000474194.1 uc057nnd.1