TSS: Hg 16015.1: Difference between revisions

Revision as of 13:32, 11 May 2019

Basic information about the TSS

TSS cluster detected^*

* The number of TSS cluster called studies (maximum 16)

Gene and protein annotation

Gene_name:	"ring finger and WD repeat domain 2, E3 ubiquitin protein ligase"
Gene_symbol:	RFWD2
Gene_synonyms:	COP1 FLJ10416 RNF200
Gene_source:	HGNC:17440

TATA-Box annotation

Distance to TSS:	-17
Nearest PromoterID:	NM_022457
Entrez ID:	64326
Nearest Unigene:	Hs.523744
Nearest Refseq:	NM_022457
Nearest Ensembl:	ENSG00000143207
Gene Name:	"ring finger and WD repeat domain 2, E3 ubiquitin protein ligase"
Gene Alias:	COP1
Gene Description:	ring finger and WD repeat domain 2
Gene Type:	protein-coding
CpG%:	0.16
GC%:	0.746269
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):

TSS expression

Expression data not found.

@@ Line 1: / Line 1: @@
 {{TSSDetail
+|RNF200=
 |all_trans=NM_001286644:0 NM_001001740:0 NM_022457:0 BC094728:0 AF527539:0 AK314750:45 BC020845:70 ENST00000474194.1:138 uc057nnd.1:138 ENST00000367669.7:-192 uc001gku.3:-192 KJ894546:234 ENST00000308769.12:243 uc001gkv.3:243 AF508940:243 AY509921:243 KJ534928:243 KJ534929:243 KJ534930:243 KJ534931:243 KJ534932:243 KJ534933:243 KJ534992:243 KJ535061:243 KJ535076:243
 |chr=chr1
@@ Line 6: / Line 7: @@
 |distance_to_tss=-17
 |end=176207301
+|end_of_center_position=176207261
 |entrez_id=64326
 |gc_percent=0.746269
-|gene_alias=COP1|RNF200
+|gene_alias=COP1
 |gene_description=ring finger and WD repeat domain 2
 |gene_id=64326
@@ Line 24: / Line 26: @@
 |species=human
 |start=176207220
+|start_of_center_position=176207260
 |strand=-
 |transcript_name=NM_001286644 NM_001001740 NM_022457 BC094728 AF527539