Template: PeakPage: Difference between revisions

From referenceTSS
Jump to: navigation, search
No edit summary
mNo edit summary
Line 4: Line 4:
table {
table {
border-collapse:collapse;
border-collapse:collapse;
width: 300px;
}
}
tr{
.inner tr{
border-bottom-style: dotted;
border-bottom-style: dotted;
border-bottom-width: thin;
border-bottom-width: thin;
Line 22: Line 21:
</html>
</html>
<span class="section_head">Basic information about the peak</span>
<span class="section_head">Basic information about the peak</span>
<hr width="500px" size="2" noshade>
<hr width="300px" size="2" noshade>
<table><tr><td>
<table width="300px"><tr><td>
<div style="width:42%; float:left;">
<div style="width:42%; float:left;">
<table>
<table class="inner" >
<tr><th scope="row" class="item_label">PeakID:</th><td>[[peak_id::{{{peak_id}}}]]</td></tr>
<tr><th scope="row" class="item_label">PeakID:</th><td>[[peak_id::{{{peak_id}}}]]</td></tr>
<tr><th scope="row" class="item_label">[[Property:species|Species]]:</th><td>[[species::{{{species}}}]]</td></tr>
<tr><th scope="row" class="item_label">[[Property:species|Species]]:</th><td>[[species::{{{species}}}]]</td></tr>
Line 32: Line 31:
</div>
</div>
<div style="width:42%; float:right;">
<div style="width:42%; float:right;">
<table>
<table class="inner" >
<tr><th scope="row" class="item_label">Start:</th><td>[[start::{{{start}}}]]</td></tr>
<tr><th scope="row" class="item_label">Start:</th><td>[[start::{{{start}}}]]</td></tr>
<tr><th scope="row" class="item_label">End:</th><td>[[end::{{{end}}}]]</td></tr>
<tr><th scope="row" class="item_label">End:</th><td>[[end::{{{end}}}]]</td></tr>
Line 42: Line 41:
<br/>
<br/>
<span class="section_head">TATA-Box annotation</span>
<span class="section_head">TATA-Box annotation</span>
<hr width="500px" size="2" noshade>
<hr width="200px" size="2" noshade>
<table border="0" ><tr><td>
<table style="width: 500px;"><tr><td>
<div style="width:42%; float:left;">
<div style="width:42%; float:left;">
<table>
<table class="inner" >
<tr><th scope="row" class="item_label">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr>
<tr><th scope="row" class="item_label">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr>
<tr><th scope="row" class="item_label">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr>
<tr><th scope="row" class="item_label">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr>
Line 56: Line 55:
</div>
</div>
<div style="width:42%; float:right;">
<div style="width:42%; float:right;">
<table>
<table class="inner" >
<tr><th scope="row" class="item_label">Gene Name:</th><td>[[gene_name::{{{gene_name}}}]]</td></tr>
<tr><th scope="row" class="item_label">Gene Name:</th><td>[[gene_name::{{{gene_name}}}]]</td></tr>
<tr><th scope="row" class="item_label">Gene Alias:</th><td>[[gene_alias::{{{gene_alias}}}]]</td></tr>
<tr><th scope="row" class="item_label">Gene Alias:</th><td>[[gene_alias::{{{gene_alias}}}]]</td></tr>

Revision as of 17:37, 7 February 2018



Basic information about the peak


PeakID:{{{peak_id}}}
Species:{{{species}}}
Chr:{{{chr}}}
Start:{{{start}}}
End:{{{end}}}
Strand:{{{strand}}}



TATA-Box annotation


Peak Score:{{{peak_score}}}
Distance to TSS:{{{distance_to_tss}}}
Nearest PromoterID:{{{nearest_promoter_id}}}
Entrez ID:{{{entrez_id}}}
Nearest Unigene:{{{nearest_unigene}}}
Nearest Refseq:{{{nearest_refseq}}}
Nearest Ensembl:{{{nearest_ensembl}}}
Gene Name:{{{gene_name}}}
Gene Alias:{{{gene_alias}}}
Gene Description:{{{gene_description}}}
Gene Type:{{{gene_type}}}
CpG%:{{{cpg_percent}}}
GC%:{{{gc_percent}}}
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):{{{tata_box}}}



Transcript annotation


Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
Num_trans:{{{num_trans}}}
All_trans:{{{all_trans}}}



Gene and protein annotation


Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
GeneID:{{{gene_id}}}
HGNC/MGI_ID:{{{hgnc_mgi_id}}}
UniProt_ID:{{{uniprot_id}}}
Gene_name:{{{gene_name}}}
Gene_symbol:{{{gene_symbol}}}
Gene_synonyms:{{{gene_synonyms}}}
Gene_source:{{{gene_source}}}



TSS classification


Chr:{{{chr}}}
Start:{{{start}}}
End:{{{end}}}
Strand:{{{strand}}}