TSS: Mm 99778.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |chr=chr11 |cpg_percent=0.03 |distance= |distance_to_tss=135227 |end=107335500 |entrez_id=71795 |gc_percent=0.38806 |gene_alias=1110020B03Rik|5830436L09Rik|AI66280...") |
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{{TSSDetail | {{TSSDetail | ||
|5830436L09Rik= | |||
|AI662802= | |||
|AI851387= | |||
|C330017I21Rik= | |||
|Dnr411= | |||
|RDGBB= | |||
|RDGBB1= | |||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 5: | Line 12: | ||
|distance_to_tss=135227 | |distance_to_tss=135227 | ||
|end=107335500 | |end=107335500 | ||
|end_of_center_position=107335493 | |||
|entrez_id=71795 | |entrez_id=71795 | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
|gene_alias=1110020B03Rik | |gene_alias=1110020B03Rik | ||
|gene_description="phosphatidylinositol transfer protein, cytoplasmic 1" | |gene_description="phosphatidylinositol transfer protein, cytoplasmic 1" | ||
|gene_name=Pitpnc1 | |gene_name=Pitpnc1 | ||
| Line 16: | Line 24: | ||
|nearest_unigene=Mm.397413 | |nearest_unigene=Mm.397413 | ||
|num_trans=0 | |num_trans=0 | ||
|rdgB-beta= | |||
|species=mouse | |species=mouse | ||
|start=107335485 | |start=107335485 | ||
|start_of_center_position=107335492 | |||
|strand=+ | |strand=+ | ||
|transcript_name= | |transcript_name= | ||
Revision as of 11:11, 12 May 2019
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 135227 |
|---|---|
| Nearest PromoterID: | NM_145823 |
| Entrez ID: | 71795 |
| Nearest Unigene: | Mm.397413 |
| Nearest Refseq: | NM_145823 |
| Nearest Ensembl: | ENSMUSG00000040430 |
| Gene Name: | Pitpnc1 |
| Gene Alias: | 1110020B03Rik |
| Gene Description: | "phosphatidylinositol transfer protein, cytoplasmic 1" |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |