TSS: Mm 66782.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NR_015609:0 uc009gzu.1:0 uc009gzt.1:0 AK135845:0 AK135966:0 AK163234:0 AK135809:0 AK139730:0 AK162109:0 AB347467:229 AB347465:322 AB347460:343 AB347462:...") |
No edit summary |
||
| Line 6: | Line 6: | ||
|distance_to_tss=3 | |distance_to_tss=3 | ||
|end=46975913 | |end=46975913 | ||
|end_of_center_position=46975909 | |||
|entrez_id=97402 | |entrez_id=97402 | ||
|gc_percent=0.432836 | |gc_percent=0.432836 | ||
| Line 24: | Line 25: | ||
|species=mouse | |species=mouse | ||
|start=46975903 | |start=46975903 | ||
|start_of_center_position=46975908 | |||
|strand=- | |strand=- | ||
|tata_box="-79(ACCCTTTAAAGG,-,0.00),-78(CCCTTTAAAGGG,+,0.00),-78(CCCTTTAAAGGG,-,0.00),-77(CCTTTAAAGGGC,+,0.00),-76(CTTTAAAGGGCC,+,0.00)" | |tata_box="-79(ACCCTTTAAAGG,-,0.00),-78(CCCTTTAAAGGG,+,0.00),-78(CCCTTTAAAGGG,-,0.00),-77(CCTTTAAAGGGC,+,0.00),-76(CTTTAAAGGGCC,+,0.00)" | ||
Revision as of 01:40, 13 May 2019
Basic information about the TSS
|
| |||||||||||||
| TSS cluster detected* |
|---|
* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NR_015609 |
| Entrez ID: | 97402 |
| Nearest Unigene: | Mm.22314 |
| Nearest Refseq: | NR_015609 |
| Nearest Ensembl: | ENSMUSG00000110001 |
| Gene Name: | expressed sequence C86187 |
| Gene Alias: | - |
| Gene Description: | expressed sequence C86187 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-79(ACCCTTTAAAGG,-,0.00),-78(CCCTTTAAAGGG,+,0.00),-78(CCCTTTAAAGGG,-,0.00),-77(CCTTTAAAGGGC,+,0.00),-76(CTTTAAAGGGCC,+,0.00)" |
TSS expression
Expression data not found.