TSS: Hg 234403.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |all_trans=CU687195:310 |chr=chr12 |cpg_percent=0.005 |distance=310 |distance_to_tss=5831 |end=52514633 |entrez_id=3852 |gc_percent=0.383085 |gene_alias=CK5|DDD|DD...") |
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{{TSSDetail | {{TSSDetail | ||
|DDD= | |||
|DDD1= | |||
|EBS2= | |||
|K5= | |||
|KRT5A= | |||
|all_trans=CU687195:310 | |all_trans=CU687195:310 | ||
|chr=chr12 | |chr=chr12 | ||
| Line 6: | Line 11: | ||
|distance_to_tss=5831 | |distance_to_tss=5831 | ||
|end=52514633 | |end=52514633 | ||
|end_of_center_position=53207229 | |||
|entrez_id=3852 | |entrez_id=3852 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
|gene_alias=CK5 | |gene_alias=CK5 | ||
|gene_description=keratin 5 | |gene_description=keratin 5 | ||
|gene_name=KRT5 | |gene_name=KRT5 | ||
| Line 19: | Line 25: | ||
|species=human | |species=human | ||
|start=52514623 | |start=52514623 | ||
|start_of_center_position=53207228 | |||
|strand=+ | |strand=+ | ||
|tata_box="-50(TATTATAAAAGC,-,0.00)" | |tata_box="-50(TATTATAAAAGC,-,0.00)" | ||
Revision as of 08:15, 13 May 2019
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 5831 |
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| Nearest PromoterID: | NM_000424 |
| Entrez ID: | 3852 |
| Nearest Unigene: | Hs.433845 |
| Nearest Refseq: | NM_000424 |
| Nearest Ensembl: | ENSG00000186081 |
| Gene Name: | KRT5 |
| Gene Alias: | CK5 |
| Gene Description: | keratin 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-50(TATTATAAAAGC,-,0.00)" |