TSS: Mm 79132.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |chr=chr9 |cpg_percent=0.015 |distance= |distance_to_tss=20027 |end=47550385 |entrez_id=54725 |gc_percent=0.412935 |gene_alias=2900073G06Rik|3100001I08Rik|AI987920...") |
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{{TSSDetail | {{TSSDetail | ||
|3100001I08Rik= | |||
|AI987920= | |||
|Bl2= | |||
|Igsf4= | |||
|Igsf4a= | |||
|Necl2= | |||
|RA175= | |||
|RA175A= | |||
|RA175B= | |||
|RA175C= | |||
|RA175N= | |||
|ST17= | |||
|SgIGSF= | |||
|SynCam= | |||
|Tslc1= | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 5: | Line 20: | ||
|distance_to_tss=20027 | |distance_to_tss=20027 | ||
|end=47550385 | |end=47550385 | ||
|end_of_center_position=47550379 | |||
|entrez_id=54725 | |entrez_id=54725 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
|gene_alias=2900073G06Rik | |gene_alias=2900073G06Rik | ||
|gene_description=cell adhesion molecule 1 | |gene_description=cell adhesion molecule 1 | ||
|gene_name=Cadm1 | |gene_name=Cadm1 | ||
| Line 18: | Line 34: | ||
|species=mouse | |species=mouse | ||
|start=47550372 | |start=47550372 | ||
|start_of_center_position=47550378 | |||
|strand=+ | |strand=+ | ||
|tata_box="-8(TTTTTTATGGTG,+,0.00)" | |tata_box="-8(TTTTTTATGGTG,+,0.00)" | ||
Revision as of 00:05, 14 May 2019
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 20027 |
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| Nearest PromoterID: | NM_018770 |
| Entrez ID: | 54725 |
| Nearest Unigene: | Mm.234832 |
| Nearest Refseq: | NM_018770 |
| Nearest Ensembl: | ENSMUSG00000032076 |
| Gene Name: | Cadm1 |
| Gene Alias: | 2900073G06Rik |
| Gene Description: | cell adhesion molecule 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-8(TTTTTTATGGTG,+,0.00)" |