TSS: Mm 80081.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |chr=chr9 |cpg_percent=0.005 |distance= |distance_to_tss=7709 |end=70020263 |entrez_id=235459 |gc_percent=0.38806 |gene_alias=TFIIA-gamma|TfIIg|Tfiia2 |gene_descri...") |
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{{TSSDetail | {{TSSDetail | ||
|TfIIg= | |||
|Tfiia2= | |||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 5: | Line 7: | ||
|distance_to_tss=7709 | |distance_to_tss=7709 | ||
|end=70020263 | |end=70020263 | ||
|end_of_center_position=70020258 | |||
|entrez_id=235459 | |entrez_id=235459 | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
|gene_alias=TFIIA-gamma | |gene_alias=TFIIA-gamma | ||
|gene_description="general transcription factor II A, 2" | |gene_description="general transcription factor II A, 2" | ||
|gene_name=Gtf2a2 | |gene_name=Gtf2a2 | ||
| Line 18: | Line 21: | ||
|species=mouse | |species=mouse | ||
|start=70020251 | |start=70020251 | ||
|start_of_center_position=70020257 | |||
|strand=+ | |strand=+ | ||
|tata_box="-54(GTTTTTAAAGAA,+,0.00),-32(GAGTATAAAAGA,-,0.00)" | |tata_box="-54(GTTTTTAAAGAA,+,0.00),-32(GAGTATAAAAGA,-,0.00)" | ||
Revision as of 02:43, 14 May 2019
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 5)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 7709 |
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| Nearest PromoterID: | NM_001282083 |
| Entrez ID: | 235459 |
| Nearest Unigene: | Mm.293117 |
| Nearest Refseq: | NM_199151 |
| Nearest Ensembl: | ENSMUSG00000033543 |
| Gene Name: | Gtf2a2 |
| Gene Alias: | TFIIA-gamma |
| Gene Description: | "general transcription factor II A, 2" |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-54(GTTTTTAAAGAA,+,0.00),-32(GAGTATAAAAGA,-,0.00)" |