rfhg_173063.1

Basic information about the TSS

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TSS ID: rfhg_173063.1 TSS ID(Version3): hg_149550.1 Species: human Chr: chr15		Start: 42208227 End: 42208325 Strand: -
Source datasets	FANTOM5|EPD|DRA000914|ENCODE|PRJNA548673|PRJNA401781 |PRJNA615891|PRJNA4843412|DRA013844|PRJNA597322|PRJDB5282
Protocol	CAGE|TSS_database|ReCappable-seq|oligo_capping|RAMPAGE |SLIC_CAGE|NETCAGE|STRIPE-seq|C1CAGE
TSS cluster detected*	14

  * The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

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Description:	PLS,CTCF-bound (EH38D2781459,EH38E1757226)
Category:	PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

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Nearest transcript id and distance: ENST00000318006.10:0 ENST00000568357.1:0 AB018313:0 AF281052:0 BX537404:0 BC068559:0 GeneID: 23339 HGNC/MGI_ID: HGNC:20593 UniProt_ID: A0A024R9L9 Nearer transcript ids and distances:

Gene_name: VPS39 Gene_symbol: VPS39 Gene_synonyms: KIAA0770 VAM6 Gene_source: HGNC:20593

TATA-Box annotation

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Distance to TSS:	28
Nearest PromoterID:	NM_001301138
Entrez ID:	23339
Nearest Unigene:	Hs.88025
Nearest Refseq:	NM_015289
Nearest Ensembl:	ENSG00000166887
Gene Name:	VPS39
Gene Alias:	TLP|VAM6|hVam6p
Gene Type:	protein-coding
CpG%:	0.051020
GC%:	0.626263
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.