rfmm_55604.1

From referenceTSS
Revision as of 02:28, 23 December 2023 by Autoedit (talk | contribs)
Jump to: navigation, search

Basic information about the TSS


TSS ID:rfmm_55604.1
Species:mouse
Chr:chr6
Start:48372539
End:48372580
Strand:+
Source datasetsFANTOM5|DRA000914
ProtocolCAGE|CAGE_and_CAGEscan
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS,CTCF-bound (EM10D1991482,EM10E0819229)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:ENSMUST00000031815.12:0
ENSMUST00000204308.2:0
ENSMUST00000203371.3:0
AB041543:0
AK158136:0
AK128931:0
GeneID:74869 77827
HGNC/MGI_ID:MGI:1922119 MGI:1925077
UniProt_ID:A0A0N4SVV3 Q6NXZ1
Nearer transcript ids and distances:
    Gene_name:Krba1
    Gene_symbol:4930447G04Rik Krba1
    Gene_synonyms:A930040G15Rik
    Gene_source:MGI:1922119 MGI:1925077



    TATA-Box annotation


    Distance to TSS:23
    Nearest PromoterID:XM_036152396.1
    Entrez ID:Krba1
    Nearest Unigene:XM_030255671
    Nearest Refseq:
    Nearest Ensembl:
    Gene Name:Krba1
    Gene Alias:
    Gene Type:
    CpG%:0.097561
    GC%:0.595238
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



    TSS expression

    Expression data not found.