rfhg_126136.1

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Basic information about the TSS


TSS ID:rfhg_126136.1
Species:human
Chr:chr10
Start:68075093
End:68075103
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D2354680,EH38E1474299)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:LF322669:4
MA558246:4
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • LF322667:-40
  • MA558244:-40
  • AK292809:-123
  • BC015043:-146
  • BC039600:-153
  • ENST00000513996.5:-154
  • ENST00000373700.9:-180
  • ENST00000412272.6:-180
  • ENST00000395198.7:-180
  • ENST00000473533.6:-180
  • ENST00000492996.6:-180
  • NM_022079.3:-180
  • NM_001278185.2:-180
  • NM_015601.4:-180
  • NM_001278186.2:-180
  • NM_001278187.2:-180
  • AY221963:-180
  • AY650033:-180
  • AY650032:-180
  • AK026808:-180
  • AY650034:-180
  • ENST00000395185.7:-198
  • ENST00000505760.5:236
  • LF384643:-243
  • MA620220:-243
view more...
Gene_name:HERC4
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:185
Nearest PromoterID:NM_015601
Entrez ID:26091
Nearest Unigene:Hs.51891
Nearest Refseq:NM_015601
Nearest Ensembl:ENSG00000148634
Gene Name:HERC4
Gene Alias:-
Gene Type:protein-coding
CpG%:0.100000
GC%:0.727273
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "LF322667:-40 MA558244:-40 AK292809:-123 BC015043:-146 BC039600:-153 ENST00000513996.5:-154 ENST00000373700.9:-180 ENST00000412272.6:-180 ENST00000395198.7:-180 ENST00000473533.6:-180 ENST00000492996.6:-180 NM_022079.3:-180 NM_001278185.2:-180 NM_015601.4:-180 NM_001278186.2:-180 NM_001278187.2:-180 AY221963:-180 AY650033:-180 AY650032:-180 AK026808:-180 AY650034:-180 ENST00000395185.7:-198 ENST00000505760.5:236 LF384643:-243 MA620220:-243" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.