rfhg_20382.1
Basic information about the TSS
|
| |||||||||||||||
| Source datasets | FANTOM5|PRJNA401781|PRJNA615891 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|RAMPAGE|oligo_capping|SLIC_CAGE|TIF-seq2 | |||||||||||||||
| TSS cluster detected* | 6 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2282809,EH38E1426446) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -66 |
|---|---|
| Nearest PromoterID: | NM_001277198 |
| Entrez ID: | 29097 |
| Nearest Unigene: | Hs.445890 |
| Nearest Refseq: | NM_014184 |
| Nearest Ensembl: | ENSG00000143771 |
| Gene Name: | CNIH4 |
| Gene Alias: | CNIH-4|CNIH2|HSPC163 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000366858.7:37 ENST00000366857.9:50 AL136930:50 AK289973:56 ENST00000465271.6:58 NM_001277199.2:58 NM_001277197.2:58 NM_001277198.2:58 NM_001277200.2:58 NM_014184.4:58 NR_102347.2:58 ENST00000366860.9:66 AK312064:66 ENST00000468318.5:67 BC039037:67 ENST00000366856.3:72 AF161512:72 BC000573:75 AK222634:85 BX649076:87 ENST00000477413.1:100 AM392966:104 AM393151:104 AM393502:104 DQ891901:104 DQ895087:104 KJ898717:104" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.