rfhg_154332.1

Basic information about the TSS

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TSS ID: rfhg_154332.1 TSS ID(Version3): hg_132405.1 Species: human Chr: chr12		Start: 88142066 End: 88142203 Strand: -
Source datasets	FANTOM5|EPD|DRA000914|PRJNA401781|PRJNA548673|PRJNA615891 |PRJNA4843412|DRA013844|PRJNA597322|PRJDB5282
Protocol	CAGE|TSS_database|RAMPAGE|oligo_capping|ReCappable-seq |SLIC_CAGE|NETCAGE|TIF-seq2|STRIPE-seq|C1CAGE
TSS cluster detected*	14

  * The number of TSS cluster called data-sets (maximum 17)

cCREs annotation

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Description:	PLS,CTCF-bound (EH38D2586942,EH38E1630094)
Category:	PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.

Gene and protein annotation

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Nearest transcript id and distance: ENST00000552810.6:0 ENST00000674971.1:0 ENST00000672414.2:0 ENST00000673058.2:0 ENST00000675833.1:0 ENST00000675476.1:0 ENST00000309041.12:0 ENST00000675794.1:0 ENST00000676074.1:0 ENST00000675408.1:0 ENST00000675230.1:0 ENST00000675628.1:0 ENST00000676448.1:0 ENST00000547926.7:0 ENST00000671822.2:0 ENST00000676351.1:0 ENST00000397838.8:0 ENST00000675559.1:0 ENST00000676418.1:0 ENST00000676331.1:0 ENST00000552770.3:0 NM_025114.4:0 LF208879:0 MA444456:0 GeneID: 80184 HGNC/MGI_ID: HGNC:29021 UniProt_ID: A0A0A0MS86 A0A5F9ZHU6 A0A5F9ZHV7 A0A6Q8PFZ5 A0A6Q8PG44 A0A6Q8PGA1 A0A6Q8PGB1 A0A6Q8PGC3 A0A6Q8PGP6 A0A6Q8PGQ4 A0A6Q8PH24 A0A6Q8PH78 F8VS29 F8W097 J3KNF5 O15078 Nearer transcript ids and distances: DQ109808:-13 AK023677:-13 LF323664:91 MA559241:91 BC043398:96 ENST00000675361.1:218 ENST00000550962.6:279 view more...

Gene_name: CEP290 Gene_symbol: CEP290 Gene_synonyms: 3H11Ag BBS14 CT87 FLJ13615 JBTS5 KIAA0373 LCA10 MKS4 NPHP6 POC3 SLSN6 rd16 Gene_source: HGNC:29021

TATA-Box annotation

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Distance to TSS:	82
Nearest PromoterID:	NM_025114
Entrez ID:	80184
Nearest Unigene:	Hs.150444
Nearest Refseq:	NM_025114
Nearest Ensembl:	ENSG00000198707
Gene Name:	CEP290
Gene Alias:	3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16
Gene Type:	protein-coding
CpG%:	0.065693
GC%:	0.565217
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):

TSS expression

Expression data not found.