rfhg_40873.1

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Basic information about the TSS


TSS ID:rfhg_40873.1
Species:human
Chr:chr2
Start:237324579
End:237324609
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:dELS (EH38D3262572,EH38E2087235)
Category:dELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:LF318962:0
MA554539:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • LF318960:60
  • MA554537:60
  • LF318963:-171
  • MA554540:-171
  • LF318959:184
  • MA554536:184
  • LF318958:409
  • MA554535:409
view more...
Gene_name:COL6A3
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:89570
Nearest PromoterID:NM_057164
Entrez ID:1293
Nearest Unigene:Hs.233240
Nearest Refseq:NM_004369
Nearest Ensembl:ENSG00000163359
Gene Name:COL6A3
Gene Alias:BTHLM1|DYT27|UCMD1
Gene Type:protein-coding
CpG%:0.033333
GC%:0.548387
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):