rfmm_121997.1

From referenceTSS
Revision as of 15:39, 13 November 2024 by Autoedit (talk | contribs)
Jump to: navigation, search

Basic information about the TSS


TSS ID:rfmm_121997.1
Species:mouse
Chr:chr13
Start:21967562
End:21967576
Strand:-
Source datasetsGSE117655|PRJDB10397|DRA000914
ProtocoldeepCAGE|C1CAGE|CAGE_and_CAGEscan
TSS cluster detected*3

  * The number of TSS cluster called data-sets (maximum 5)


cCREs annotation


Description:PLS (EM10D1340040,EM10E0553330)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:NM_178207.2:0
AK155722:0
GeneID:319153
HGNC/MGI_ID:MGI:2448350
UniProt_ID:
Nearer transcript ids and distances:
  • ENSMUST00000189457.2:22
  • BC116383:22
  • BC127148:23
  • BC107287:26
view more...
Gene_name:H3c11
Gene_symbol:H3c11
Gene_synonyms:H3-H Hist1h3i
Gene_source:MGI:2448350



TATA-Box annotation


Distance to TSS:-2
Nearest PromoterID:NM_178207.2
Entrez ID:H3c11
Nearest Unigene:NM_178207
Nearest Refseq:
Nearest Ensembl:
Gene Name:H3c11
Gene Alias:
Gene Type:
CpG%:0.000000
GC%:0.400000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.