rfhg_199015.1
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2965142,EH38E1887646) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 131 |
|---|---|
| Nearest PromoterID: | NM_001204408 |
| Entrez ID: | 6397 |
| Nearest Unigene: | Hs.464184 |
| Nearest Refseq: | NM_003003 |
| Nearest Ensembl: | ENSG00000129657 |
| Gene Name: | small nucleolar RNA host gene 20 |
| Gene Alias: | PRELID4A|SEC14L |
| Gene Type: | protein-coding |
| CpG%: | 0.076923 |
| GC%: | 0.571429 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "ENST00000569632.1:-33 FN357122:-33 FN357123:-33 FN357126:-33 ENST00000648740.1:-43 ENST00000565256.1:-61 ENST00000566583.5:-61 ENST00000561633.5:-61 ENST00000564509.5:-61 ENST00000561721.6:-61 ENST00000589827.5:-61 ENST00000392476.6:-61 FN357117:-61 FN357118:-61 FN357119:-61 FN357120:-61 FN357121:-61 FN357125:-61 FM995498:-61 FM995497:-61 FM995495:-61 ENST00000648984.1:-98 NM_001204408.2:-125 NM_001204410.2:-125 BX648413:-137 ENST00000647904.1:-138 ENST00000650557.1:-144 ENST00000649712.1:-150 ENST00000649047.1:-159 NR_027058.1:-167 ENST00000648926.1:-179 ENST00000434411.6:-179 ENST00000430767.8:332 FM995496:332 AF130050:398 ENST00000515981.1:484 NR_003013.1:484 AJ609486:484" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.