FastQCFastQC Report
Thu 5 Sep 2024
wt_rep2.fq

Summary

[OK]Basic Statistics

MeasureValue
Filenamewt_rep2.fq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27649926
Sequences flagged as poor quality0
Sequence length35-76
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTAAACCTAGCCCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTACCCAAATAAAGTAT1915220.6926673149143329No Hit
GCCGAAACGATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCG1853820.6704611072015165No Hit
AACACGGACCAAGGAGTCTAACACGTGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAATGAAGGTGA1769070.6398100305946569No Hit
GCTTCTTTTCCGACAAAACACCAAATGGCGGATGACGCCGGTGCAGCGGG1458050.5273251002552412No Hit
GAATCCGACTGTTTAATTAAAACAAAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGTGATTTCTGCCC1314650.4754623936425725No Hit
GGTTTTTCTCCCCGCCGCTGCGCTGGTAAGCCTGTGTTTTGGTTCGCTATGGCCCGTACTAAGCAGACTGCTCGC1240950.4488077110947783No Hit
GAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTC1075070.3888147838081013No Hit
GTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1066720.38579488422500663No Hit
GTTTTAGGGAGGGAGAGCGGCCTGGGTCCTGGGTGTTGTGTGCGGAGCTGTGGCGTCGCGTGTGAGGCGCGTGC1055120.38159957462453964No Hit
GTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGTGAGGCGGGG960270.347295685348308No Hit
GGACTTTCCCGATCGCCAGGCAGGAGTTTCTCTCGGTGACTACTATCGCT951290.34404793705415343No Hit
GTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCAAGCGTT910850.32942221979183595No Hit
GGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGTGAGGCGGG910420.32926670400492214No Hit
GCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATAT856960.30993211338070126No Hit
GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATC817690.2957295437246378No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT770030.27849260790065045No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACTAACCAGG761690.275476324963763No Hit
GGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACATGAGAGGTGTAGA734710.2657186134964701No Hit
GCGCATGAATGGATGAACGAGATTCCCACTGTCCCTACCTACTATCCAGC704200.25468422591800066No Hit
GAGTAGGAGGGCCGCTGCGGTGAGCCTTGAAGCCTAGGGCGCGGGCCCGG697390.25222128985083No Hit
GGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGAC693470.25080356453756875No Hit
GAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAGGCGGA667010.2412339186730554No Hit
GATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCTCGCCAGAACACTACG663120.2398270432984161No Hit
GCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTGC645880.23359194523703244No Hit
GAGAAGCTGTCTATCGGGCTCCAGCGGTCATGTCCGGCAGAGGAAAGGGC623160.22537492505404896No Hit
GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATA611480.22115068228392368No Hit
GGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCA609230.22033693688728134No Hit
GAGATTTTTGCGGCTATTTTCGTTGGTGTGTTGGTCATGTCTGGTCGCGGCAAAGGCGGAAAGGGACTGGGTAA604050.21846351415190043No Hit
GCTCTCGGCCTTAGCGCCATTTTTTTGGAAACCTCTGCGCCATGAGAGCCAAGTGGAGGAAGAAGCGAATGCGC575100.20799332338176965No Hit
GAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACA563690.20386673005924139No Hit
ACGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGT530800.19197158068343473No Hit
GCTTTTTCGTCTGGGCTGCCAACATGCCATCCAGACTGAGGAAGACCCGG510280.18455022266605706No Hit
ATTTTTTCGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCTGTGTGTCTAATACATGCATGTCGAGCGAAGGT502340.18167860557746157No Hit
GCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCC488750.17676358338174214No Hit
GCTCTTTCCCTGCCGCCGCCGAGTCGCGCGGAGGCGGAGGCTTGGGTGCG467580.16910714336089No Hit
ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATC454100.16423190427345086No Hit
GTGTAAATCTCGCGCCGGGCCGTACCCATATCCGCAGCAGGTCTCCAAGGTGAACAGCCTCTGGCATGTTGGAAC416660.15069118087332314No Hit
ATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGC398750.1442137675160505No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN395450.1430202742676418No Hit
GCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCA388900.1406513710018609No Hit
GTCCAGTGCGGTAACGCGACCGATCCCGGAGAAGCCGGCGGGAGCCCCGG383760.1387924148513092No Hit
GCTCTCCGCCAGACCGCCGCCGCGCCGCCATCATGGACACCAGCCGTGTG373650.13513598553572984No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACCAGG373160.13495876987157218No Hit
GCTTTTCCAAGCGGCTGCCGAAGATGGCGGAGGTGCAGGTCCTGGTGCTT370420.13396780881077222No Hit
GCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGTGA369390.13359529425142042No Hit
GGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGCGCTCTCGC353800.12795694281424116No Hit
GCTTTCCAACTTGGACGCTGCAGAATGGCTCCCGCAAAGAAGGGTGGCGAGAAGAAAAAGGGCCGTTCTGCCATC352790.12759166154730398No Hit
GGAAGTGAATCTAGCTCTGAAGGCATGGCGCGTACGAAGCAGACTGCTCG352030.12731679643554925No Hit
GCCTTTCGTTGCCTGATCGCCGCCATCATGGGTCGCATGCATGCTCCCGG345690.12502384274012163No Hit
GACAAAGCGTTGGGTGAGACTCCTCTTGCTCGTCATGTCTGGCCGCGGCA344730.12467664470422091No Hit
GAGACGCGGAGCTGGGAAAAGGGAGGCAGAGGAGGCGGAGGCAGAGGCAGAGGCAGAGCCCGGTGCCGAGACCA342820.12398586527862679No Hit
GACTGCGATAGGAATCATGTCTGGTCGCGGCAAAGGCGGAAAAGGCTTGG335970.12150846262662693No Hit
GCTTTCTCTCTCGCGCGCGGTGTGGTGGCAGCAGGCGCAGCCCAGCCTCG324630.11740718582754978No Hit
GCTCTTTTCCGTGGCGCCTCGGAGGCGTTCAGCTGCTTCAAGATGAAGCT324050.11719742034752643No Hit
GAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATGAACG323800.11710700419234395No Hit
GCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCA323700.11707083773027097No Hit
GCTTTCCGCGCCGATAGCGCTCACGCAAGCATGGTTAACGTCCCTAAAAC313330.11332037561330181No Hit
GCTCTTCTGAGGATCCGGCAAGATGGCAGAAGTAGAGCAGAAGAAGAAGC308920.11172543463588293No Hit
GCTACGCCGCGACGAGTAGGAGGGCCGCTGCGGTGAGCCTTGAAGCCTAG305540.11050300821781585No Hit
GCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGGCATGCTAACT305070.11033302584607278No Hit
GTTCAAGCTCAACACCCACTACCTAAAAAATCCCAAACATATAACTGAACTCCTCACACCCAATTGGACCAATCT304790.11023175975226841No Hit
AAGACTATACTTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTT302250.10931313161561444No Hit
GCTCTTCCCTTTTGCGGCCATCACCGAAGCGGGAGCGGCCAAAATGAAGTTTAATCCCTTTGTGACTTCCGACCG301140.10891168388660426No Hit
GGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATC299390.10827877080032691No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA295980.10704549444363794No Hit
GCCTTTTTGCTGTAGGCCCGGGTGGTTGCTGCCGAAATGGGCAAGTTCAT293480.10614133289181317No Hit
GCTCTTCCACAGGAGGCCTACACGCCGCCGCTTGTGCTGCAGCCATGTCTCTAGTGATCCCTGAAAAGTTCCAGC286770.1037145632867155No Hit
TTTAAGTAAGAGTATTTGGTGGATGCCTTGGGTCTGAAAGTCGATGAAGG284240.10279955179626882No Hit
GCTCTACCGGCGGGATTTGATGGCGTGATGTCTCACAGAAAGTTCTCCGC280420.10141799294508058No Hit

[OK]Adapter Content

Adapter graph