Difference between revisions of "TSS:Hg 105219.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 3: | Line 3: | ||
|MYOP= | |MYOP= | ||
|RCM4= | |RCM4= | ||
| − | |all_trans=ENST00000540630.5 | + | |all_trans=NR_045662:-30 ENST00000540630.5:68 NM_001256267:68 BX648564:70 BX647640:74 ENST00000354393.6:106 AL832379:106 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-30 |
| − | |distance_to_tss= | + | |distance_to_tss=36 |
|end=68106049 | |end=68106049 | ||
| + | |end_of_center_position=68106043 | ||
|entrez_id=84665 | |entrez_id=84665 | ||
|gc_percent=0.442786 | |gc_percent=0.442786 | ||
| − | |gene_alias=CMD1DD | + | |gene_alias=CMD1DD{{!}}CMH22{{!}}MYOP{{!}}NEM11{{!}}RCM4 |
|gene_description=myopalladin | |gene_description=myopalladin | ||
|gene_id=84665 | |gene_id=84665 | ||
| Line 21: | Line 22: | ||
|hgnc_mgi_id=HGNC:23246 | |hgnc_mgi_id=HGNC:23246 | ||
|nearest_ensembl=ENSG00000138347 | |nearest_ensembl=ENSG00000138347 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_045662 |
|nearest_refseq=NM_032578 | |nearest_refseq=NM_032578 | ||
|nearest_unigene=Hs.55205 | |nearest_unigene=Hs.55205 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=68106036 | |start=68106036 | ||
| + | |start_of_center_position=68106042 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001256267.2 NR_045662.4 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105219.1 | |tss_id=hg_105219.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 19:26, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68106042 |
|---|---|
| End of the center position in the TSS region: | 68106043 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001256267.2 NR_045662.4 |
|---|---|
| Distance: | -30 |
| Num_trans: | 7 |
| All_trans: | NR_045662:-30 ENST00000540630.5:68 NM_001256267:68 BX648564:70 BX647640:74 ENST00000354393.6:106 AL832379:106 |
TATA-Box annotation
| Distance to TSS: | 36 |
|---|---|
| Nearest PromoterID: | NR_045662 |
| Entrez ID: | 84665 |
| Nearest Unigene: | Hs.55205 |
| Nearest Refseq: | NM_032578 |
| Nearest Ensembl: | ENSG00000138347 |
| Gene Name: | myopalladin |
| Gene Alias: | CMD1DD|CMH22|MYOP|NEM11|RCM4 |
| Gene Description: | myopalladin |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
